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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031696 through 18771 annotations produced 1 hits

CG14030 (Bub1):

Annotation Number : CG14030
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031696
Gbrowse : chr2L:5279050-5283018 (+) // 100.0 //
Probeset : 1623237_at
Accessions : protein= NP_608919;, nucleotide= NM_135075;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0031696.
BDGP gene expression has embryonic in situ data for CG14030: 4 pix of staining in 1 body parts.
Homophila reports that CG14030 is a close match (4e-22) to human gene BUB1B;BUBR1 (NP_001202), a gene associated with Colorectal cancer, 114500 (3);Mosaic variegated aneuploidy syndrome, 257300 (3);[Premature chromatid separation trait], 176430 (3).
BioGrid reports that CG14030 interacts with CG7581 CG14946 CG15532 CG15693 CG2986 CG32635 CG4328 CG4532 CG5099 CG5352 CG5893 CG6457 CG8332 CG8959 CG9022 CG9091 CG9184 CG9972 .
TRiP has 1 RNAi stocks for FBgn0031696 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031696 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain101 24 of 4 1.10None
Head51 14 of 4 0.60Down
Eye52 14 of 4 0.59Down
Thoracicoabdominal ganglion85 54 of 4 1.00None
Salivary gland93 44 of 4 1.05None
Crop85 24 of 4 1.00None
Midgut80 24 of 4 0.90None
Tubule45 24 of 4 0.50Down
Hindgut81 24 of 4 0.90None
Heart56 14 of 4 0.63Down
Fat body49 94 of 4 0.55Down
Ovary179 34 of 4 2.00Up
Testis174 34 of 4 2.00Up
Male accessory glands59 34 of 4 0.70Down
Virgin spermatheca33 44 of 4 0.38Down
Mated spermatheca47 24 of 4 0.53Down
Adult carcass52 64 of 4 0.60Down
Larval CNS128 64 of 4 1.44Up
Larval Salivary gland90 34 of 4 1.02None
Larval midgut45 44 of 4 0.52Down
Larval tubule87 44 of 4 1.00None
Larval hindgut68 24 of 4 0.77Down
Larval fat body69 124 of 4 0.80None
Larval trachea93 44 of 4 1.05None
Larval carcass75 44 of 4 0.84None
S2 cells (growing)143 14 of 4 1.61Up
Whole fly89 44 of 4

Looking for FBgn0031696. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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