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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031707 through 18771 annotations produced 1 hits



(CG14020):

Annotation Number : CG14020
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031707
Gbrowse : chr2L:5517841-5518822 (+) // 100.0 //
Probeset : 1634371_at
Accessions : protein= NP_608928;, nucleotide= NM_135084;
FlyMine data for FBgn0031707.
VDRC has 3 RNAi stocks for FBgn0031707 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head11 11 of 4 1.30None
Eye5 11 of 4 0.65None
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland2 00 of 4 0.31Down
Crop1 10 of 4 0.20Down
Midgut6 20 of 4 0.70None
Tubule2 10 of 4 0.30Down
Hindgut4 00 of 4 0.50Down
Heart2 10 of 4 0.26Down
Fat body2 00 of 4 0.22Down
Ovary1 00 of 4 0.10Down
Testis90 14 of 410.10Up
Male accessory glands4 30 of 4 0.60None
Virgin spermatheca0 00 of 4 0.09Down
Mated spermatheca2 10 of 4 0.28Down
Adult carcass4 10 of 4 0.50None
Larval CNS1 10 of 4 0.15Down
Larval Salivary gland7 20 of 4 0.80None
Larval midgut2 10 of 4 0.28Down
Larval tubule3 20 of 4 0.40None
Larval hindgut1 00 of 4 0.14Down
Larval fat body35 73 of 4 4.00Up
Larval trachea1 20 of 4 0.22Down
Larval carcass0 00 of 4 0.11Down
S2 cells (growing)1 00 of 4 0.12Down
Whole fly9 12 of 4

Looking for FBgn0031707. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime