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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031715 through 18771 annotations produced 1 hits

tombola (tomb):

Annotation Number : CG14016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031715
Gbrowse : chr2L:5535932-5536726 (-) // 100.0 //
Probeset : 1639996_at
Accessions : protein= NP_608936;, nucleotide= NM_135092;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031715.
BioGrid reports that CG14016 interacts with CG7182 CG5303 CG3176 CG32817 .
TRiP has 1 RNAi stocks for FBgn0031715 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031715 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.20Down
Head4 10 of 4 0.40Down
Eye1 00 of 4 0.12Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland3 10 of 4 0.27Down
Crop2 10 of 4 0.20Down
Midgut7 10 of 4 0.50None
Tubule4 10 of 4 0.30Down
Hindgut4 20 of 4 0.30Down
Heart0 00 of 4 0.07Down
Fat body4 40 of 4 0.32Down
Ovary1 00 of 4 0.10Down
Testis52 34 of 4 4.00Up
Male accessory glands3 10 of 4 0.30Down
Virgin spermatheca1 00 of 4 0.09Down
Mated spermatheca2 00 of 4 0.15Down
Adult carcass4 20 of 4 0.40Down
Larval CNS2 20 of 4 0.22Down
Larval Salivary gland6 20 of 4 0.48None
Larval midgut7 20 of 4 0.58None
Larval tubule3 10 of 4 0.30Down
Larval hindgut1 00 of 4 0.11Down
Larval fat body24 51 of 4 1.90None
Larval trachea2 10 of 4 0.18Down
Larval carcass0 00 of 4 0.07Down
S2 cells (growing)3 10 of 4 0.28Down
Whole fly13 21 of 4

Looking for FBgn0031715. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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