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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031721 through 18771 annotations produced 2 hits


(CG14017):

Annotation Number : CG14017
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031721
Gbrowse : chr2L:5553896-5554552 (+) // 100.0 //
Probeset : 1626853_a_at
Accessions : protein= NP_608942; /// NP_723097;, nucleotide= NM_135098; /// NM_164650;
FlyMine data for FBgn0031721.
BDGP gene expression has embryonic in situ data for CG14017: 2 pix of staining in 1 body parts.
BioGrid reports that CG14017 interacts with CG15224 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.10Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 10 of 4 0.10Down
Heart0 ± 00 of 4 0.03Down
Fat body1 ± 10 of 4 0.07Down
Ovary2 ± 00 of 4 0.10Down
Testis304 ± 164 of 411.70Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.02Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass3 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland2 ± 10 of 4 0.09Down
Larval midgut0 ± 00 of 4 0.02Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.05Down
Larval fat body43 ± 273 of 4 1.70None
Larval trachea1 ± 10 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly26 ± 44 of 4


(CG14017):

Annotation Number : CG14017
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031721
Gbrowse : chr2L:5553896-5555140 (+) // 100.0 //
Probeset : 1634301_at
Accessions : protein= NP_608942; /// NP_723097;, nucleotide= NM_135098; /// NM_164650;
FlyMine data for FBgn0031721.
BDGP gene expression has embryonic in situ data for CG14017: 2 pix of staining in 1 body parts.
BioGrid reports that CG14017 interacts with CG15224 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head2 ± 00 of 4 0.10Down
Eye2 ± 10 of 4 0.09Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland9 ± 30 of 4 0.33Down
Crop4 ± 00 of 4 0.20Down
Midgut6 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.10Down
Hindgut3 ± 00 of 4 0.10Down
Heart3 ± 00 of 4 0.11Down
Fat body3 ± 20 of 4 0.14Down
Ovary2 ± 00 of 4 0.10Down
Testis419 ± 284 of 414.50Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca3 ± 00 of 4 0.11Down
Mated spermatheca2 ± 10 of 4 0.10Down
Adult carcass6 ± 10 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.08Down
Larval Salivary gland6 ± 20 of 4 0.24Down
Larval midgut7 ± 01 of 4 0.24Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.07Down
Larval fat body43 ± 213 of 4 1.50None
Larval trachea4 ± 21 of 4 0.15Down
Larval carcass0 ± 00 of 4 0.03Down
S2 cells (growing)2 ± 00 of 4 0.09Down
Whole fly28 ± 24 of 4

Looking for FBgn0031721. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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