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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031726 through 18771 annotations produced 1 hits



():

Annotation Number : CR7249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031726
Gbrowse : chr2L:5621601-5623760 (-) // 100.0 //
Probeset : 1625614_at
Accessions : protein= , nucleotide=
FlyMine data for FBgn0031726.
BDGP gene expression has embryonic in situ data for Cyp6a16Psi: 16 pix of staining in 3 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head5 ± 10 of 4 0.50None
Eye1 ± 00 of 4 0.12None
Thoracicoabdominal ganglion1 ± 00 of 4 0.10None
Salivary gland3 ± 10 of 4 0.31None
Crop1 ± 00 of 4 0.10None
Midgut6 ± 20 of 4 0.60None
Tubule467 ± 604 of 440.70Up
Hindgut6 ± 20 of 4 0.60None
Heart2 ± 10 of 4 0.20None
Fat body5 ± 30 of 4 0.49None
Ovary1 ± 00 of 4 0.10None
Testis0 ± 00 of 4 0.10None
Male accessory glands2 ± 00 of 4 0.20None
Virgin spermatheca4 ± 10 of 4 0.35None
Mated spermatheca3 ± 00 of 4 0.27None
Adult carcass4 ± 10 of 4 0.30None
Larval CNS1 ± 20 of 4 0.16None
Larval Salivary gland13 ± 30 of 4 1.20None
Larval midgut11 ± 20 of 4 1.02None
Larval tubule76 ± 104 of 4 6.70Up
Larval hindgut2 ± 00 of 4 0.18None
Larval fat body2 ± 10 of 4 0.20None
Larval trachea3 ± 20 of 4 0.27None
Larval carcass1 ± 00 of 4 0.16None
S2 cells (growing)1 ± 00 of 4 0.11None
Whole fly11 ± 30 of 4

Looking for FBgn0031726. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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