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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031728 through 18771 annotations produced 1 hits


Hsp60C (Hsp60C):

Annotation Number : CG7235
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031728
Gbrowse : chr2L:5662848-5670838 (+) // 99.82 //
Probeset : 1626179_s_at
Accessions : protein= NP_608948; /// NP_723104; /// NP_723105;, nucleotide= NM_135104; /// NM_164654; /// NM_164655;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from el
FlyMine data for FBgn0031728.
Homophila reports that CG7235 is a close match (0) to human gene HSP60;HSPD1;SPG13 (NP_955472), a gene associated with Leukodystrophy, hypomyelinating, autosomal recessive, 612233 (3);Spastic paraplegia-13, 605280 (3).
VDRC has 5 RNAi stocks for FBgn0031728 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland3 ± 20 of 4 0.01Down
Crop1 ± 00 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart3 ± 11 of 4 0.01Down
Fat body5 ± 20 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis2803 ± 694 of 4 6.20Up
Male accessory glands1 ± 10 of 4 0.00Down
Virgin spermatheca4 ± 00 of 4 0.01Down
Mated spermatheca4 ± 11 of 4 0.01Down
Adult carcass13 ± 41 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.00Down
Larval Salivary gland0 ± 00 of 4 0.00Down
Larval midgut2 ± 10 of 4 0.01Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.00Down
Larval fat body413 ± 2394 of 4 0.90None
Larval trachea10 ± 111 of 4 0.02Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly453 ± 324 of 4

Looking for FBgn0031728. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime