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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031730 through 18771 annotations produced 1 hits


Annotation Number : CG7236
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031730
Gbrowse : chr2L:5712256-5713553 (+) // 100.0 //
Probeset : 1626477_at
Accessions : protein= NP_608950;, nucleotide= NM_135106;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0031730.
Homophila reports that CG7236 is a close match (6e-11) to human gene LRRK2;PARK8 (NP_940980), a gene associated with Parkinson disease-8, 607060 (3).
BioGrid reports that CG7236 interacts with CG9160 CG1630 CG15218 CG3850 CG8591 CG16932 CG5009 CG11206 CG6923 .
TRiP has 1 RNAi stocks for FBgn0031730 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.60Down
Head18 10 of 413.40Up
Eye8 20 of 4 6.09None
Thoracicoabdominal ganglion8 10 of 4 6.00Up
Salivary gland2 00 of 4 1.61None
Crop1 00 of 4 0.90None
Midgut1 00 of 4 0.90None
Tubule1 00 of 4 0.90None
Hindgut1 00 of 4 0.90None
Heart0 00 of 4 0.50Down
Fat body2 00 of 4 1.68Up
Ovary0 00 of 4 0.60None
Testis1 00 of 4 1.30None
Male accessory glands1 00 of 4 1.10None
Virgin spermatheca1 00 of 4 0.89None
Mated spermatheca1 00 of 4 0.73None
Adult carcass3 00 of 4 2.20Up
Larval CNS0 00 of 4 0.34Down
Larval Salivary gland1 00 of 4 1.20None
Larval midgut1 00 of 4 0.84None
Larval tubule0 00 of 4 0.60None
Larval hindgut0 00 of 4 0.57None
Larval fat body1 00 of 4 0.80None
Larval trachea1 00 of 4 0.88None
Larval carcass1 00 of 4 1.00None
S2 cells (growing)1 00 of 4 1.18None
Whole fly1 00 of 4

Looking for FBgn0031730. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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