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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031732 through 18771 annotations produced 1 hits



chr2L:5718120-5720896 (-) // 100.0 // ():

Annotation Number : CG11149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638973_s_at
Accessions : protein= , nucleotide= NP_001162889; /// NP_001162890; /// NP_608952; /// NP_723110;
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland6 ± 20 of 4 0.19Down
Crop4 ± 10 of 4 0.10Down
Midgut939 ± 354 of 427.50Up
Tubule197 ± 344 of 4 5.80Up
Hindgut86 ± 104 of 4 2.50Up
Heart3 ± 00 of 4 0.09Down
Fat body4 ± 20 of 4 0.13Down
Ovary1 ± 10 of 4 0.10Down
Testis8 ± 22 of 4 0.30Down
Male accessory glands3 ± 20 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca5 ± 10 of 4 0.15Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.06Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut359 ± 154 of 410.55Up
Larval tubule28 ± 14 of 4 0.80None
Larval hindgut36 ± 34 of 4 1.06None
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea1 ± 10 of 4 0.04Down
Larval carcass2 ± 00 of 4 0.08Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly34 ± 33 of 4

Looking for FBgn0031732. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime