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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031734 through 18771 annotations produced 1 hits



(CG11147):

Annotation Number : CG11147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031734
Gbrowse : chr2L:5733674-5741244 (-) // 100.0 //
Probeset : 1635031_s_at
Accessions : protein= NP_608954; /// NP_723114;, nucleotide= NM_135110; /// NM_164658;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0043190 // ATP-binding cassette (ABC) transporter complex
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0031734.
BDGP gene expression has embryonic in situ data for CG11147: 23 pix of staining in 11 body parts.
Homophila reports that CG11147 is a close match (7e-11) to human gene ABCC11;EWWD;MRP8;WW (NP_660187), a gene associated with [Earwax, wet/dry], 117800 (3).
VDRC has 2 RNAi stocks for FBgn0031734 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 14 of 4 0.10Down
Head724 164 of 4 2.70Up
Eye295 164 of 4 1.12None
Thoracicoabdominal ganglion17 44 of 4 0.10Down
Salivary gland90 104 of 4 0.34Down
Crop371 174 of 4 1.40Up
Midgut125 84 of 4 0.50Down
Tubule30 14 of 4 0.10Down
Hindgut449 54 of 4 1.70Up
Heart44 44 of 4 0.17Down
Fat body75 264 of 4 0.29Down
Ovary34 64 of 4 0.10Down
Testis9 14 of 4 0.00Down
Male accessory glands13 11 of 4 0.10Down
Virgin spermatheca27 24 of 4 0.10Down
Mated spermatheca34 34 of 4 0.13Down
Adult carcass870 164 of 4 3.30Up
Larval CNS10 24 of 4 0.04Down
Larval Salivary gland14 14 of 4 0.05Down
Larval midgut34 44 of 4 0.13Down
Larval tubule5 00 of 4 0.00Down
Larval hindgut245 184 of 4 0.93None
Larval fat body5 11 of 4 0.00Down
Larval trachea347 584 of 4 1.32None
Larval carcass55 24 of 4 0.21Down
S2 cells (growing)6 02 of 4 0.03Down
Whole fly264 134 of 4

Looking for FBgn0031734. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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