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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031736 through 18771 annotations produced 1 hits



(CG11030):

Annotation Number : CG11030
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031736
Gbrowse : chr2L:5724657-5759810 (+) // 100.0 //
Probeset : 1633629_at
Accessions : protein= NP_608956;, nucleotide= NM_135112;
FlyMine data for FBgn0031736.
BioGrid reports that CG11030 interacts with CG13030 .
VDRC has 1 RNAi stocks for FBgn0031736 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 44 of 4 0.60Down
Head34 24 of 4 0.50Down
Eye30 14 of 4 0.42Down
Thoracicoabdominal ganglion39 64 of 4 0.60Down
Salivary gland53 54 of 4 0.75None
Crop94 24 of 4 1.30Up
Midgut38 24 of 4 0.50Down
Tubule58 34 of 4 0.80Down
Hindgut38 04 of 4 0.50Down
Heart46 34 of 4 0.65Down
Fat body46 54 of 4 0.65Down
Ovary122 34 of 4 1.70Up
Testis59 04 of 4 0.80None
Male accessory glands54 44 of 4 0.80None
Virgin spermatheca25 44 of 4 0.36Down
Mated spermatheca37 44 of 4 0.53Down
Adult carcass54 34 of 4 0.80None
Larval CNS69 24 of 4 0.98None
Larval Salivary gland76 34 of 4 1.07None
Larval midgut29 14 of 4 0.41Down
Larval tubule30 24 of 4 0.40Down
Larval hindgut36 34 of 4 0.51Down
Larval fat body25 24 of 4 0.40Down
Larval trachea83 84 of 4 1.17None
Larval carcass54 114 of 4 0.75None
S2 cells (growing)96 24 of 4 1.35Up
Whole fly71 64 of 4

Looking for FBgn0031736. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime