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FlyAtlas: the Drosophila gene expression atlas

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Latest news: Please report unexpected behaviours to julian.dow @ glasgow. ac. uk
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031737 through 18771 annotations produced 2 hits



CG11142 (obst-E):

Annotation Number : CG11142
Flybase ID : FBgn0031737
Gbrowse : chr2L:5763459-5766141 (-) // 100.0 //
Probeset : 1638612_at
Accessions : protein= NP_608957; /// NP_723116;, nucleotide= NM_135113; /// NM_164659;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0031737.
BioGrid reports that CG11142 interacts with CG1391 CG2522 CG31111 CG1133 .
VDRC has 1 RNAi stocks for FBgn0031737 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 0.10Down
Head123 74 of 4 2.90Up
Eye137 134 of 4 3.20Up
Thoracicoabdominal ganglion8 10 of 4 0.20Down
Salivary gland56 54 of 4 1.30None
Crop453 184 of 410.50Up
Midgut21 24 of 4 0.50Down
Tubule12 11 of 4 0.30Down
Hindgut185 34 of 4 4.30Up
Heart16 24 of 4 0.38Down
Fat body27 93 of 4 0.62Down
Ovary2 00 of 4 0.00Down
Testis6 11 of 4 0.20Down
Male accessory glands15 22 of 4 0.40Down
Virgin spermatheca30 24 of 4 0.71Down
Mated spermatheca37 24 of 4 0.87None
Adult carcass97 24 of 4 2.30Up
Larval CNS13 14 of 4 0.30Down
Larval Salivary gland24 24 of 4 0.57Down
Larval midgut16 20 of 4 0.37Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut388 364 of 4 9.01Up
Larval fat body4 00 of 4 0.10Down
Larval trachea657 874 of 415.25Up
Larval carcass3389 4374 of 478.55Up
S2 cells (growing)7 03 of 4 0.17Down
Whole fly43 34 of 4



CG11142 (obst-E):

Annotation Number : CG11142
Flybase ID : FBgn0031737
Gbrowse : chr2L:5762673-5766141 (-) // 100.0 //
Probeset : 1628498_at
Accessions : protein= NP_608957; /// NP_723116;, nucleotide= NM_135113; /// NM_164659;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0031737.
BioGrid reports that CG11142 interacts with CG1391 CG2522 CG31111 CG1133 .
VDRC has 1 RNAi stocks for FBgn0031737 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 31 of 4 0.30Down
Head119 74 of 4 3.00Up
Eye137 54 of 4 3.48Up
Thoracicoabdominal ganglion11 11 of 4 0.30Down
Salivary gland28 10 of 4 0.72None
Crop294 54 of 4 7.50Up
Midgut28 40 of 4 0.70None
Tubule13 20 of 4 0.30Down
Hindgut183 124 of 4 4.70Up
Heart8 20 of 4 0.22Down
Fat body19 120 of 4 0.48Down
Ovary9 10 of 4 0.20Down
Testis7 10 of 4 0.20Down
Male accessory glands14 21 of 4 0.40Down
Virgin spermatheca23 10 of 4 0.60Down
Mated spermatheca24 40 of 4 0.62None
Adult carcass89 54 of 4 2.30Up
Larval CNS7 11 of 4 0.20Down
Larval Salivary gland19 21 of 4 0.48Down
Larval midgut9 10 of 4 0.23Down
Larval tubule10 20 of 4 0.30Down
Larval hindgut235 294 of 4 5.97Up
Larval fat body15 50 of 4 0.40Down
Larval trachea251 404 of 4 6.38Up
Larval carcass1515 2964 of 438.48Up
S2 cells (growing)19 11 of 4 0.49Down
Whole fly39 44 of 4

Looking for FBgn0031737. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime