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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031738 through 18771 annotations produced 1 hits



chr2L:5768244-5800204 (-) // 100.0 // ():

Annotation Number : CG9171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633801_s_at
Accessions : protein= , nucleotide= NP_001162891; /// NP_608958; /// NP_723117;
Pathway : 0002121 // inter-male aggressive behavior // inferred from mutant phenotype
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain177 64 of 4 2.20Up
Head53 54 of 4 0.70Down
Eye76 94 of 4 0.96None
Thoracicoabdominal ganglion132 134 of 4 1.70Up
Salivary gland413 1184 of 4 5.22None
Crop57 44 of 4 0.70None
Midgut221 294 of 4 2.80Up
Tubule621 1614 of 4 7.90Up
Hindgut138 24 of 4 1.70Up
Heart30 24 of 4 0.38Down
Fat body28 34 of 4 0.35Down
Ovary115 54 of 4 1.50Up
Testis31 14 of 4 0.40Down
Male accessory glands124 64 of 4 1.60Up
Virgin spermatheca420 334 of 4 5.31Up
Mated spermatheca525 554 of 4 6.63Up
Adult carcass34 44 of 4 0.40Down
Larval CNS76 164 of 4 0.97None
Larval Salivary gland57 34 of 4 0.73None
Larval midgut105 124 of 4 1.33None
Larval tubule537 334 of 4 6.80Up
Larval hindgut163 164 of 4 2.07Up
Larval fat body30 24 of 4 0.40Down
Larval trachea69 124 of 4 0.88None
Larval carcass53 104 of 4 0.68None
S2 cells (growing)215 44 of 4 2.72Up
Whole fly79 74 of 4

Looking for FBgn0031738. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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