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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031739 through 18771 annotations produced 1 hits



(CG14005):

Annotation Number : CG14005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031739
Gbrowse : chr2L:5800513-5801969 (-) // 100.0 //
Probeset : 1636482_at
Accessions : protein= NP_608959;, nucleotide= NM_135115;
FlyMine data for FBgn0031739.
BDGP gene expression has embryonic in situ data for CG14005: 4 pix of staining in 1 body parts.
BioGrid reports that CG14005 interacts with CG15096 CG15764 CG18609 CG6905 CG7196 CG8361 .
VDRC has 2 RNAi stocks for FBgn0031739 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 ± 54 of 4 1.00None
Head40 ± 14 of 4 0.60Down
Eye71 ± 14 of 4 1.00None
Thoracicoabdominal ganglion52 ± 34 of 4 0.70Down
Salivary gland54 ± 63 of 4 0.76None
Crop52 ± 14 of 4 0.70Down
Midgut40 ± 54 of 4 0.60Down
Tubule58 ± 24 of 4 0.80Down
Hindgut60 ± 24 of 4 0.80None
Heart34 ± 24 of 4 0.48Down
Fat body28 ± 84 of 4 0.40Down
Ovary143 ± 74 of 4 2.00Up
Testis27 ± 44 of 4 0.40Down
Male accessory glands53 ± 54 of 4 0.80None
Virgin spermatheca57 ± 44 of 4 0.81None
Mated spermatheca53 ± 64 of 4 0.75None
Adult carcass33 ± 34 of 4 0.50Down
Larval CNS85 ± 54 of 4 1.20None
Larval Salivary gland53 ± 24 of 4 0.75Down
Larval midgut37 ± 24 of 4 0.53Down
Larval tubule37 ± 14 of 4 0.50Down
Larval hindgut42 ± 24 of 4 0.59Down
Larval fat body23 ± 44 of 4 0.30Down
Larval trachea58 ± 134 of 4 0.82None
Larval carcass34 ± 34 of 4 0.48Down
S2 cells (growing)124 ± 74 of 4 1.74Up
Whole fly71 ± 54 of 4

Looking for FBgn0031739. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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