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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031740 through 18771 annotations produced 1 hits



(CG7239):

Annotation Number : CG7239
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031740
Gbrowse : chr2L:5802254-5804037 (+) // 100.0 //
Probeset : 1633046_at
Accessions : protein= NP_608960;, nucleotide= NM_135116;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0031740.
BDGP gene expression has embryonic in situ data for CG7239: 4 pix of staining in 1 body parts.
BioGrid reports that CG7239 interacts with CG9776 .
VDRC has 1 RNAi stocks for FBgn0031740 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 24 of 4 1.70Up
Head60 34 of 4 1.10None
Eye95 64 of 4 1.66Up
Thoracicoabdominal ganglion83 04 of 4 1.50Up
Salivary gland54 34 of 4 0.95None
Crop48 54 of 4 0.80None
Midgut49 34 of 4 0.90None
Tubule64 44 of 4 1.10None
Hindgut57 24 of 4 1.00None
Heart23 24 of 4 0.41Down
Fat body26 14 of 4 0.45Down
Ovary124 74 of 4 2.20Up
Testis18 24 of 4 0.30Down
Male accessory glands73 34 of 4 1.30None
Virgin spermatheca30 14 of 4 0.52Down
Mated spermatheca32 34 of 4 0.57Down
Adult carcass40 14 of 4 0.70None
Larval CNS140 44 of 4 2.44Up
Larval Salivary gland65 34 of 4 1.14None
Larval midgut47 24 of 4 0.82None
Larval tubule42 04 of 4 0.70None
Larval hindgut66 34 of 4 1.15None
Larval fat body34 23 of 4 0.60Down
Larval trachea63 64 of 4 1.11None
Larval carcass52 14 of 4 0.91None
S2 cells (growing)123 64 of 4 2.15Up
Whole fly57 64 of 4

Looking for FBgn0031740. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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