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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031745 through 18771 annotations produced 1 hits



(CG8965):

Annotation Number : CG8965
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031745
Gbrowse : chr2L:5859761-5879481 (-) // 100.0 //
Probeset : 1626233_at
Accessions : protein= NP_608965;, nucleotide= NM_135121;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031745.
BDGP gene expression has embryonic in situ data for CG8965: 103 pix of staining in 27 body parts.
BioGrid reports that CG8965 interacts with CG9331 CG9493 CG9640 .
VDRC has 2 RNAi stocks for FBgn0031745 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 14 of 4 0.40Down
Head77 44 of 4 1.30None
Eye19 14 of 4 0.34Down
Thoracicoabdominal ganglion77 54 of 4 1.30None
Salivary gland364 154 of 4 6.15Up
Crop332 114 of 4 5.60Up
Midgut91 64 of 4 1.50Up
Tubule106 44 of 4 1.80Up
Hindgut135 84 of 4 2.30Up
Heart46 54 of 4 0.79None
Fat body12 23 of 4 0.21Down
Ovary53 54 of 4 0.90None
Testis43 14 of 4 0.70None
Male accessory glands19 24 of 4 0.30Down
Virgin spermatheca615 454 of 410.37Up
Mated spermatheca935 1454 of 415.76Up
Adult carcass39 34 of 4 0.70None
Larval CNS48 84 of 4 0.82None
Larval Salivary gland39 44 of 4 0.66None
Larval midgut39 34 of 4 0.67None
Larval tubule18 24 of 4 0.30Down
Larval hindgut50 54 of 4 0.85None
Larval fat body27 63 of 4 0.50Down
Larval trachea70 214 of 4 1.19None
Larval carcass68 84 of 4 1.16None
S2 cells (growing)1 00 of 4 0.02Down
Whole fly59 84 of 4

Looking for FBgn0031745. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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