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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031751 through 18771 annotations produced 1 hits



(CG9016):

Annotation Number : CG9016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031751
Gbrowse : chr2L:5922903-5923646 (-) // 100.0 //
Probeset : 1631128_s_at
Accessions : protein= NP_608970; /// NP_723127;, nucleotide= NM_135126; /// NM_164665;
FlyMine data for FBgn0031751.
VDRC has 2 RNAi stocks for FBgn0031751 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 44 of 4 0.10Down
Head17 ± 14 of 4 0.00Down
Eye6 ± 12 of 4 0.01Down
Thoracicoabdominal ganglion22 ± 24 of 4 0.00Down
Salivary gland19 ± 14 of 4 0.02Down
Crop10 ± 31 of 4 0.00Down
Midgut5 ± 10 of 4 0.00Down
Tubule10 ± 12 of 4 0.00Down
Hindgut8 ± 12 of 4 0.00Down
Heart7 ± 13 of 4 0.01Down
Fat body12 ± 63 of 4 0.01Down
Ovary4 ± 01 of 4 0.00Down
Testis4494 ± 2354 of 4 4.40Up
Male accessory glands21 ± 44 of 4 0.00Down
Virgin spermatheca12 ± 14 of 4 0.01Down
Mated spermatheca24 ± 34 of 4 0.02Down
Adult carcass33 ± 73 of 4 0.00Down
Larval CNS79 ± 54 of 4 0.08Down
Larval Salivary gland7 ± 10 of 4 0.01Down
Larval midgut22 ± 34 of 4 0.02Down
Larval tubule8 ± 10 of 4 0.00Down
Larval hindgut7 ± 23 of 4 0.01Down
Larval fat body788 ± 4294 of 4 0.80None
Larval trachea33 ± 504 of 4 0.03Down
Larval carcass17 ± 24 of 4 0.02Down
S2 cells (growing)5 ± 12 of 4 0.01Down
Whole fly1010 ± 694 of 4

Looking for FBgn0031751. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime