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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031753 through 18771 annotations produced 1 hits



(CG13999):

Annotation Number : CG13999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031753
Gbrowse : chr2L:5955613-5956225 (-) // 100.0 //
Probeset : 1633360_at
Accessions : protein= NP_608972;, nucleotide= NM_135128;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031753.
BioGrid reports that CG13999 interacts with CG14186 .
VDRC has 2 RNAi stocks for FBgn0031753 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain182 ± 64 of 4 7.90Up
Head44 ± 94 of 4 1.90None
Eye23 ± 24 of 4 1.00None
Thoracicoabdominal ganglion137 ± 64 of 4 6.00Up
Salivary gland9 ± 30 of 4 0.41Down
Crop5 ± 11 of 4 0.20Down
Midgut4 ± 10 of 4 0.20Down
Tubule6 ± 00 of 4 0.30Down
Hindgut4 ± 10 of 4 0.20Down
Heart2 ± 00 of 4 0.10Down
Fat body3 ± 10 of 4 0.15Down
Ovary2 ± 00 of 4 0.10Down
Testis223 ± 114 of 4 9.70Up
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca1 ± 00 of 4 0.07Down
Mated spermatheca1 ± 11 of 4 0.08Down
Adult carcass10 ± 02 of 4 0.50Down
Larval CNS51 ± 74 of 4 2.22Up
Larval Salivary gland5 ± 11 of 4 0.26Down
Larval midgut4 ± 12 of 4 0.17Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.13Down
Larval fat body30 ± 123 of 4 1.30None
Larval trachea3 ± 20 of 4 0.16Down
Larval carcass3 ± 10 of 4 0.15Down
S2 cells (growing)3 ± 01 of 4 0.15Down
Whole fly23 ± 34 of 4

Looking for FBgn0031753. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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