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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031757 through 18771 annotations produced 1 hits



Ucp4C (Ucp4C):

Annotation Number : CG9064
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031757
Gbrowse : chr2L:5968596-5969761 (+) // 100.0 //
Probeset : 1632843_at
Accessions : protein= NP_608976;, nucleotide= NM_135132;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005488 // binding // inferred from electronic annotation /// 0017077 // oxidative phosphorylation uncoupler activity //
FlyMine data for FBgn0031757.
BDGP gene expression has embryonic in situ data for Ucp4C: 2 pix of staining in 1 body parts.
Homophila reports that CG9064 is a close match (3e-11) to human gene PHC;SLC25A3 (NP_005879), a gene associated with Micochondrial phosphate carrier deficiency, 610773 (3).
VDRC has 2 RNAi stocks for FBgn0031757 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye2 10 of 4 0.07Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland8 50 of 4 0.18Down
Crop4 10 of 4 0.10Down
Midgut7 10 of 4 0.20Down
Tubule5 00 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart1 00 of 4 0.03Down
Fat body1 00 of 4 0.04Down
Ovary5 01 of 4 0.10Down
Testis558 154 of 412.70Up
Male accessory glands4 30 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.04Down
Mated spermatheca2 00 of 4 0.05Down
Adult carcass9 30 of 4 0.20Down
Larval CNS4 10 of 4 0.09Down
Larval Salivary gland4 10 of 4 0.10Down
Larval midgut4 10 of 4 0.10Down
Larval tubule7 10 of 4 0.20Down
Larval hindgut5 10 of 4 0.11Down
Larval fat body52 292 of 4 1.20None
Larval trachea4 50 of 4 0.10Down
Larval carcass4 10 of 4 0.11Down
S2 cells (growing)2 00 of 4 0.05Down
Whole fly44 24 of 4

Looking for FBgn0031757. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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