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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031758 through 18771 annotations produced 3 hits



Ucp4B (Ucp4B):

Annotation Number : CG18340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031758
Gbrowse : chr2L:5969882-5970651 (+) // 100.0 //
Probeset : 1636463_at
Accessions : protein= NP_608977; /// NP_723135;, nucleotide= NM_135133; /// NM_164666;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from s
Interpro : 0005488 // binding // inferred from electronic annotation /// 0017077 // oxidative phosphorylation uncoupler activity //
FlyMine data for FBgn0031758.
Homophila reports that CG18340 is a close match (8e-11) to human gene HHH;ORNT1;SLC25A15 (NP_055067), a gene associated with Hyperornithinemia-hyperammonemia-homocitrullinemia syndrome, 238970 (3).
VDRC has 2 RNAi stocks for FBgn0031758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 1.00None
Head4 02 of 4 1.20None
Eye3 10 of 4 0.95None
Thoracicoabdominal ganglion5 11 of 4 1.70None
Salivary gland9 30 of 4 2.94None
Crop1 00 of 4 0.40None
Midgut4 00 of 4 1.30None
Tubule4 00 of 4 1.40None
Hindgut3 11 of 4 1.00None
Heart3 00 of 4 0.98None
Fat body4 10 of 4 1.32None
Ovary2 11 of 4 0.70None
Testis12 14 of 4 3.80Up
Male accessory glands7 31 of 4 2.20None
Virgin spermatheca4 02 of 4 1.25None
Mated spermatheca3 11 of 4 1.13None
Adult carcass7 30 of 4 2.20None
Larval CNS2 00 of 4 0.71None
Larval Salivary gland6 11 of 4 2.04None
Larval midgut3 00 of 4 1.04None
Larval tubule4 11 of 4 1.30None
Larval hindgut4 01 of 4 1.29None
Larval fat body5 01 of 4 1.70None
Larval trachea1 20 of 4 0.57None
Larval carcass4 00 of 4 1.26None
S2 cells (growing)1 00 of 4 0.35None
Whole fly3 11 of 4



Ucp4B (Ucp4B):

Annotation Number : CG18340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031758
Gbrowse : chr2L:5969882-5970651 (+) // 100.0 //
Probeset : 1634681_a_at
Accessions : protein= NP_608977; /// NP_723135;, nucleotide= NM_135133; /// NM_164666;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from s
Interpro : 0005488 // binding // inferred from electronic annotation /// 0017077 // oxidative phosphorylation uncoupler activity //
FlyMine data for FBgn0031758.
Homophila reports that CG18340 is a close match (8e-11) to human gene HHH;ORNT1;SLC25A15 (NP_055067), a gene associated with Hyperornithinemia-hyperammonemia-homocitrullinemia syndrome, 238970 (3).
VDRC has 2 RNAi stocks for FBgn0031758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 00 of 4 0.10Down
Eye3 10 of 4 0.16Down
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland5 10 of 4 0.30Down
Crop2 00 of 4 0.10Down
Midgut21 30 of 4 1.10None
Tubule3 00 of 4 0.20Down
Hindgut3 10 of 4 0.20Down
Heart1 00 of 4 0.06Down
Fat body1 10 of 4 0.09Down
Ovary2 00 of 4 0.10Down
Testis95 64 of 4 4.80Up
Male accessory glands4 30 of 4 0.20Down
Virgin spermatheca2 10 of 4 0.11Down
Mated spermatheca3 10 of 4 0.18Down
Adult carcass2 00 of 4 0.10Down
Larval CNS0 00 of 4 0.05Down
Larval Salivary gland1 00 of 4 0.08Down
Larval midgut8 40 of 4 0.45None
Larval tubule2 00 of 4 0.10Down
Larval hindgut2 00 of 4 0.12Down
Larval fat body14 71 of 4 0.70None
Larval trachea7 30 of 4 0.39Down
Larval carcass2 00 of 4 0.12Down
S2 cells (growing)1 00 of 4 0.09Down
Whole fly19 30 of 4



Ucp4B (Ucp4B):

Annotation Number : CG18340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031758
Gbrowse : chr2L:5969882-5970984 (+) // 100.0 //
Probeset : 1627781_at
Accessions : protein= NP_608977; /// NP_723135;, nucleotide= NM_135133; /// NM_164666;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from s
Interpro : 0005488 // binding // inferred from electronic annotation /// 0017077 // oxidative phosphorylation uncoupler activity //
FlyMine data for FBgn0031758.
Homophila reports that CG18340 is a close match (8e-11) to human gene HHH;ORNT1;SLC25A15 (NP_055067), a gene associated with Hyperornithinemia-hyperammonemia-homocitrullinemia syndrome, 238970 (3).
VDRC has 2 RNAi stocks for FBgn0031758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head3 10 of 4 0.20Down
Eye4 00 of 4 0.21Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland11 50 of 4 0.55None
Crop4 00 of 4 0.20Down
Midgut2 00 of 4 0.10Down
Tubule3 10 of 4 0.20Down
Hindgut3 10 of 4 0.20Down
Heart3 10 of 4 0.15Down
Fat body6 20 of 4 0.29Down
Ovary1 00 of 4 0.10Down
Testis261 64 of 412.90Up
Male accessory glands5 30 of 4 0.30Down
Virgin spermatheca5 10 of 4 0.26Down
Mated spermatheca1 00 of 4 0.09Down
Adult carcass3 10 of 4 0.20Down
Larval CNS2 10 of 4 0.10Down
Larval Salivary gland4 10 of 4 0.20Down
Larval midgut1 00 of 4 0.07Down
Larval tubule4 10 of 4 0.20Down
Larval hindgut2 00 of 4 0.11Down
Larval fat body25 111 of 4 1.20None
Larval trachea6 21 of 4 0.32Down
Larval carcass3 00 of 4 0.17Down
S2 cells (growing)1 00 of 4 0.07Down
Whole fly20 24 of 4

Looking for FBgn0031758. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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