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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031760 through 18771 annotations produced 1 hits

Tetraspanin 26A (Tsp26A):

Annotation Number : CG9093
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031760
Gbrowse : chr2L:6000228-6001320 (+) // 100.0 //
Probeset : 1627225_at
Accessions : protein= NP_001097093;, nucleotide= NM_001103623;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0031760.
BDGP gene expression has embryonic in situ data for Tsp26A: 4 pix of staining in 1 body parts.
Homophila reports that CG9093 is a close match (5e-15) to human gene A15;MRX58;MXS1;TM4SF2 (NP_004606), a gene associated with Mental retardation, X-linked 58, 300210 (3).
TRiP has 1 RNAi stocks for FBgn0031760 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031760 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 2.50None
Head7 10 of 4 3.60Up
Eye2 10 of 4 1.36None
Thoracicoabdominal ganglion5 20 of 4 2.40None
Salivary gland6 20 of 4 3.09None
Crop4 20 of 4 2.00None
Midgut2 00 of 4 1.00None
Tubule4 00 of 4 2.20Up
Hindgut7 10 of 4 3.40Up
Heart4 00 of 4 2.00None
Fat body2 00 of 4 1.02None
Ovary3 10 of 4 1.60None
Testis8 10 of 4 3.70Up
Male accessory glands5 30 of 4 2.40None
Virgin spermatheca4 10 of 4 2.26None
Mated spermatheca6 30 of 4 3.05None
Adult carcass1 00 of 4 0.80None
Larval CNS5 20 of 4 2.41None
Larval Salivary gland6 20 of 4 2.84None
Larval midgut4 10 of 4 2.15None
Larval tubule17 13 of 4 7.90Up
Larval hindgut6 20 of 4 3.13None
Larval fat body5 20 of 4 2.70None
Larval trachea10 30 of 4 4.64Up
Larval carcass5 10 of 4 2.45None
S2 cells (growing)8 00 of 4 3.69Up
Whole fly2 00 of 4

Looking for FBgn0031760. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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