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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031762 through 18771 annotations produced 1 hits



(CG9098):

Annotation Number : CG9098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031762
Gbrowse : chr2L:6007487-6011203 (-) // 99.8 //
Probeset : 1631188_a_at
Accessions : protein= NP_608979; /// NP_723142;, nucleotide= NM_135135; /// NM_164672;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005070 // SH3/SH2 adaptor activity // inferred from sequence or structural similarity /// 0005085 // guanyl-nucleotide
FlyMine data for FBgn0031762.
BDGP gene expression has embryonic in situ data for CG9098: 12 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0031762 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 ± 34 of 4 4.80Up
Head37 ± 34 of 4 1.30None
Eye19 ± 24 of 4 0.71None
Thoracicoabdominal ganglion127 ± 74 of 4 4.60Up
Salivary gland445 ± 54 of 415.96Up
Crop6 ± 10 of 4 0.20Down
Midgut6 ± 10 of 4 0.20Down
Tubule13 ± 11 of 4 0.50Down
Hindgut67 ± 34 of 4 2.40Up
Heart5 ± 10 of 4 0.19Down
Fat body26 ± 173 of 4 0.94None
Ovary32 ± 14 of 4 1.20None
Testis11 ± 04 of 4 0.40Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca15 ± 23 of 4 0.54Down
Mated spermatheca21 ± 63 of 4 0.77None
Adult carcass17 ± 24 of 4 0.60None
Larval CNS335 ± 264 of 412.04Up
Larval Salivary gland24 ± 34 of 4 0.89None
Larval midgut127 ± 84 of 4 4.56Up
Larval tubule12 ± 20 of 4 0.50Down
Larval hindgut51 ± 24 of 4 1.83Up
Larval fat body6 ± 21 of 4 0.20Down
Larval trachea41 ± 94 of 4 1.49None
Larval carcass10 ± 21 of 4 0.39Down
S2 cells (growing)9 ± 12 of 4 0.34Down
Whole fly27 ± 34 of 4

Looking for FBgn0031762. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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