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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031766 through 18771 annotations produced 1 hits



(CG9117):

Annotation Number : CG9117
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031766
Gbrowse : chr2L:6036989-6037902 (-) // 100.0 //
Probeset : 1632406_at
Accessions : protein= NP_608983;, nucleotide= NM_135139;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0031766.
BDGP gene expression has embryonic in situ data for CG9117: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031766 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 04 of 4 0.30Down
Head22 ± 14 of 4 0.50Down
Eye15 ± 14 of 4 0.35Down
Thoracicoabdominal ganglion23 ± 04 of 4 0.50Down
Salivary gland64 ± 54 of 4 1.44Up
Crop33 ± 03 of 4 0.80Down
Midgut45 ± 21 of 4 1.00None
Tubule33 ± 04 of 4 0.80Down
Hindgut30 ± 04 of 4 0.70Down
Heart21 ± 24 of 4 0.49Down
Fat body41 ± 64 of 4 0.93None
Ovary64 ± 34 of 4 1.40Up
Testis27 ± 04 of 4 0.60Down
Male accessory glands54 ± 24 of 4 1.20Up
Virgin spermatheca39 ± 14 of 4 0.89None
Mated spermatheca40 ± 04 of 4 0.90None
Adult carcass26 ± 13 of 4 0.60Down
Larval CNS26 ± 54 of 4 0.60Down
Larval Salivary gland46 ± 14 of 4 1.05None
Larval midgut50 ± 53 of 4 1.13None
Larval tubule53 ± 34 of 4 1.20None
Larval hindgut34 ± 14 of 4 0.78Down
Larval fat body44 ± 94 of 4 1.00None
Larval trachea32 ± 44 of 4 0.73Down
Larval carcass27 ± 24 of 4 0.61Down
S2 cells (growing)13 ± 14 of 4 0.31Down
Whole fly44 ± 14 of 4

Looking for FBgn0031766. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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