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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031771 through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase 51 kDa (CG9140):

Annotation Number : CG9140
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031771
Gbrowse : chr2L:6060834-6062757 (-) // 100.0 //
Probeset : 1633269_at
Accessions : protein= NP_608987;, nucleotide= NM_135143;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred fr
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
FlyMine data for FBgn0031771.
BDGP gene expression has embryonic in situ data for CG9140: 11 pix of staining in 14 body parts.
Homophila reports that CG9140 is a close match (0) to human gene NDUFV1;UQOR1 (NP_009034), a gene associated with Alexander disease, 203450 (3);Leigh syndrome, 256000 (3);Mitochondrial complex I deficiency, 252010 (3).
TRiP has 2 RNAi stocks for FBgn0031771 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031771 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1415 ± 84 of 4 1.10None
Head1635 ± 214 of 4 1.30Up
Eye2492 ± 414 of 4 1.95Up
Thoracicoabdominal ganglion1591 ± 404 of 4 1.20Up
Salivary gland1614 ± 774 of 4 1.26Up
Crop1163 ± 254 of 4 0.90None
Midgut920 ± 274 of 4 0.70Down
Tubule1593 ± 624 of 4 1.20Up
Hindgut1634 ± 304 of 4 1.30Up
Heart1903 ± 684 of 4 1.49Up
Fat body1544 ± 1214 of 4 1.21Up
Ovary568 ± 64 of 4 0.40Down
Testis121 ± 34 of 4 0.10Down
Male accessory glands534 ± 94 of 4 0.40Down
Virgin spermatheca1413 ± 1444 of 4 1.11None
Mated spermatheca1130 ± 784 of 4 0.89None
Adult carcass3081 ± 444 of 4 2.40Up
Larval CNS605 ± 394 of 4 0.47Down
Larval Salivary gland621 ± 274 of 4 0.49Down
Larval midgut1188 ± 544 of 4 0.93None
Larval tubule757 ± 474 of 4 0.60Down
Larval hindgut1399 ± 704 of 4 1.10None
Larval fat body382 ± 394 of 4 0.30Down
Larval trachea600 ± 524 of 4 0.47Down
Larval carcass1182 ± 794 of 4 0.93None
S2 cells (growing)509 ± 94 of 4 0.40Down
Whole fly1276 ± 714 of 4

Looking for FBgn0031771. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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