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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031773 through 18771 annotations produced 1 hits



CG9144 (Fbw5):

Annotation Number : CG9144
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031773
Gbrowse : chr2L:6063561-6065949 (-) // 100.0 //
Probeset : 1635843_at
Accessions : protein= NP_608989;, nucleotide= NM_135145;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031773.
TRiP has 1 RNAi stocks for FBgn0031773 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031773 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 ± 64 of 4 0.90None
Head93 ± 44 of 4 0.90None
Eye81 ± 24 of 4 0.75Down
Thoracicoabdominal ganglion103 ± 34 of 4 1.00None
Salivary gland92 ± 34 of 4 0.85None
Crop95 ± 54 of 4 0.90None
Midgut59 ± 44 of 4 0.60Down
Tubule66 ± 74 of 4 0.60Down
Hindgut71 ± 34 of 4 0.70Down
Heart86 ± 54 of 4 0.80Down
Fat body111 ± 144 of 4 1.03None
Ovary194 ± 54 of 4 1.80Up
Testis142 ± 34 of 4 1.30Up
Male accessory glands95 ± 44 of 4 0.90None
Virgin spermatheca115 ± 54 of 4 1.06None
Mated spermatheca104 ± 54 of 4 0.96None
Adult carcass114 ± 54 of 4 1.10None
Larval CNS90 ± 44 of 4 0.84None
Larval Salivary gland100 ± 34 of 4 0.92None
Larval midgut84 ± 74 of 4 0.78Down
Larval tubule134 ± 44 of 4 1.20Up
Larval hindgut92 ± 64 of 4 0.85None
Larval fat body98 ± 14 of 4 0.90None
Larval trachea81 ± 164 of 4 0.75Down
Larval carcass151 ± 144 of 4 1.39None
S2 cells (growing)58 ± 04 of 4 0.54Down
Whole fly108 ± 64 of 4

Looking for FBgn0031773. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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