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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031779 through 18771 annotations produced 1 hits



(CG9175):

Annotation Number : CG9175
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031779
Gbrowse : chr2L:6096694-6098964 (-) // 100.0 //
Probeset : 1628795_s_at
Accessions : protein= NP_608995; /// NP_723155;, nucleotide= NM_135151; /// NM_164681;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity
FlyMine data for FBgn0031779.
BDGP gene expression has embryonic in situ data for CG9175: 28 pix of staining in 12 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain124 ± 14 of 4 1.40Up
Head86 ± 44 of 4 1.00None
Eye33 ± 24 of 4 0.38Down
Thoracicoabdominal ganglion120 ± 24 of 4 1.40Up
Salivary gland373 ± 104 of 4 4.26Up
Crop106 ± 84 of 4 1.20None
Midgut134 ± 44 of 4 1.50Up
Tubule85 ± 84 of 4 1.00None
Hindgut74 ± 34 of 4 0.90Down
Heart59 ± 44 of 4 0.68Down
Fat body107 ± 54 of 4 1.23Up
Ovary129 ± 44 of 4 1.50Up
Testis129 ± 04 of 4 1.50Up
Male accessory glands381 ± 174 of 4 4.30Up
Virgin spermatheca113 ± 84 of 4 1.29None
Mated spermatheca147 ± 104 of 4 1.68Up
Adult carcass96 ± 54 of 4 1.10None
Larval CNS118 ± 74 of 4 1.35Up
Larval Salivary gland668 ± 324 of 4 7.61Up
Larval midgut166 ± 64 of 4 1.90Up
Larval tubule94 ± 24 of 4 1.10None
Larval hindgut139 ± 84 of 4 1.59Up
Larval fat body132 ± 94 of 4 1.50Up
Larval trachea93 ± 154 of 4 1.07None
Larval carcass180 ± 84 of 4 2.05Up
S2 cells (growing)290 ± 24 of 4 3.31Up
Whole fly87 ± 14 of 4

Looking for FBgn0031779. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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