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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031784 through 18771 annotations produced 1 hits



(CG9222):

Annotation Number : CG9222
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031784
Gbrowse : chr2L:6131022-6132484 (+) // 100.0 //
Probeset : 1624591_at
Accessions : protein= NP_608999;, nucleotide= NM_135155;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred fr
FlyMine data for FBgn0031784.
Homophila reports that CG9222 is a close match (9e-11) to human gene MAPK10;PRKM10;JNK3 (NP_620447), a gene associated with Epileptic encephalopathy, Lennox-Gastaut type, 606369 (3).
VDRC has 2 RNAi stocks for FBgn0031784 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 10 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland11 ± 00 of 4 0.13Down
Crop7 ± 20 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body4 ± 20 of 4 0.05Down
Ovary2 ± 00 of 4 0.00Down
Testis1113 ± 364 of 412.30Up
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.04Down
Mated spermatheca1 ± 10 of 4 0.02Down
Adult carcass5 ± 20 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.04Down
Larval Salivary gland4 ± 21 of 4 0.05Down
Larval midgut2 ± 10 of 4 0.02Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.03Down
Larval fat body110 ± 604 of 4 1.20None
Larval trachea3 ± 31 of 4 0.04Down
Larval carcass2 ± 00 of 4 0.03Down
S2 cells (growing)72 ± 34 of 4 0.80Down
Whole fly90 ± 34 of 4

Looking for FBgn0031784. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime