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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031785 through 18771 annotations produced 1 hits


(CG13991):

Annotation Number : CG13991
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031785
Gbrowse : chr2L:6139460-6145011 (+) // 100.0 //
Probeset : 1629022_at
Accessions : protein= NP_609000;, nucleotide= NM_135156;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0008236 // serine-type peptidase activity // inferred from electronic annotation
FlyMine data for FBgn0031785.
BioGrid reports that CG13991 interacts with CG15710 .
VDRC has 3 RNAi stocks for FBgn0031785 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion2 ± 20 of 4 0.10Down
Salivary gland2 ± 00 of 4 0.10Down
Crop3 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.02Down
Fat body1 ± 10 of 4 0.07Down
Ovary0 ± 00 of 4 0.00Down
Testis463 ± 154 of 421.10Up
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.03Down
Mated spermatheca2 ± 10 of 4 0.09Down
Adult carcass9 ± 40 of 4 0.40None
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.06Down
Larval midgut6 ± 10 of 4 0.28Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.05Down
Larval fat body39 ± 232 of 4 1.80None
Larval trachea4 ± 40 of 4 0.21Down
Larval carcass3 ± 00 of 4 0.16Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly21 ± 12 of 4

Looking for FBgn0031785. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime