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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031800 through 18771 annotations produced 1 hits



(CG9497):

Annotation Number : CG9497
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031800
Gbrowse : chr2L:6346541-6348151 (-) // 100.0 //
Probeset : 1627801_at
Accessions : protein= NP_609014;, nucleotide= NM_135170;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031800.
VDRC has 2 RNAi stocks for FBgn0031800 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 23 of 4 0.20Down
Head1350 504 of 412.50Up
Eye234 1084 of 4 2.17None
Thoracicoabdominal ganglion13 11 of 4 0.10Down
Salivary gland10 30 of 4 0.10Down
Crop8 20 of 4 0.10Down
Midgut8 30 of 4 0.10Down
Tubule409 204 of 4 3.80Up
Hindgut55 64 of 4 0.50Down
Heart8 11 of 4 0.08Down
Fat body11 60 of 4 0.11Down
Ovary4 10 of 4 0.00Down
Testis3 00 of 4 0.00Down
Male accessory glands3 00 of 4 0.00Down
Virgin spermatheca7 10 of 4 0.06Down
Mated spermatheca12 30 of 4 0.11Down
Adult carcass64 64 of 4 0.60Down
Larval CNS3 20 of 4 0.03Down
Larval Salivary gland2 00 of 4 0.03Down
Larval midgut3 00 of 4 0.03Down
Larval tubule18 20 of 4 0.20Down
Larval hindgut5 10 of 4 0.05Down
Larval fat body11 30 of 4 0.10Down
Larval trachea5 51 of 4 0.05Down
Larval carcass4 10 of 4 0.04Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly108 44 of 4

Looking for FBgn0031800. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime