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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031801 through 18771 annotations produced 1 hits



(CG9498):

Annotation Number : CG9498
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031801
Gbrowse : chr2L:6349392-6351028 (-) // 100.0 //
Probeset : 1623706_at
Accessions : protein= NP_609015;, nucleotide= NM_135171;
FlyMine data for FBgn0031801.
VDRC has 2 RNAi stocks for FBgn0031801 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 14 of 4 0.10Down
Head319 ± 184 of 4 0.90None
Eye102 ± 554 of 4 0.28Down
Thoracicoabdominal ganglion37 ± 14 of 4 0.10Down
Salivary gland34 ± 13 of 4 0.09Down
Crop964 ± 264 of 4 2.70Up
Midgut378 ± 364 of 4 1.00None
Tubule5433 ± 2124 of 415.00Up
Hindgut2010 ± 684 of 4 5.60Up
Heart489 ± 424 of 4 1.35None
Fat body628 ± 564 of 4 1.74Up
Ovary1 ± 10 of 4 0.00Down
Testis4 ± 00 of 4 0.00Down
Male accessory glands394 ± 544 of 4 1.10None
Virgin spermatheca251 ± 574 of 4 0.69None
Mated spermatheca220 ± 224 of 4 0.61Down
Adult carcass509 ± 484 of 4 1.40None
Larval CNS7 ± 52 of 4 0.02Down
Larval Salivary gland40 ± 24 of 4 0.11Down
Larval midgut118 ± 54 of 4 0.33Down
Larval tubule257 ± 934 of 4 0.70None
Larval hindgut502 ± 394 of 4 1.39Up
Larval fat body4 ± 00 of 4 0.00Down
Larval trachea12 ± 43 of 4 0.03Down
Larval carcass15 ± 51 of 4 0.04Down
S2 cells (growing)4 ± 10 of 4 0.01Down
Whole fly362 ± 114 of 4

Looking for FBgn0031801. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime