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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031805 through 18771 annotations produced 1 hits



(CG9505):

Annotation Number : CG9505
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031805
Gbrowse : chr2L:6367883-6370195 (+) // 100.0 //
Probeset : 1623438_at
Accessions : protein= NP_609019;, nucleotide= NM_135175;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0031805.
Homophila reports that CG9505 is a close match (8e-15) to human gene ECE1 (NP_001388), a gene associated with Hirschsprung disease, cardiac defects, and autonomic dysfunction (3);{Hypertension, essential, susceptibility to}, 145500 (3).
VDRC has 2 RNAi stocks for FBgn0031805 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.20Down
Head65 ± 54 of 4 1.80Up
Eye41 ± 34 of 4 1.14None
Thoracicoabdominal ganglion4 ± 00 of 4 0.10Down
Salivary gland6 ± 20 of 4 0.16Down
Crop1 ± 00 of 4 0.00Down
Midgut4 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.20Down
Hindgut2 ± 10 of 4 0.10Down
Heart65 ± 54 of 4 1.78Up
Fat body117 ± 164 of 4 3.21Up
Ovary13 ± 04 of 4 0.40Down
Testis9 ± 02 of 4 0.30Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca77 ± 84 of 4 2.13Up
Mated spermatheca104 ± 34 of 4 2.85Up
Adult carcass81 ± 24 of 4 2.20Up
Larval CNS1 ± 10 of 4 0.05Down
Larval Salivary gland4 ± 20 of 4 0.12Down
Larval midgut29 ± 22 of 4 0.80None
Larval tubule19 ± 13 of 4 0.50Down
Larval hindgut3 ± 00 of 4 0.11Down
Larval fat body142 ± 104 of 4 3.90Up
Larval trachea7 ± 10 of 4 0.20Down
Larval carcass12 ± 12 of 4 0.35Down
S2 cells (growing)73 ± 94 of 4 2.01Up
Whole fly36 ± 44 of 4

Looking for FBgn0031805. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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