FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031808 through 18771 annotations produced 1 hits

(CG9507):

Annotation Number : CG9507
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031808
Gbrowse : chr2L:6381265-6383421 (+) // 100.0 //
Probeset : 1634466_at
Accessions : protein= NP_609022;, nucleotide= NM_135178;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0031808.
Homophila reports that CG9507 is a close match (5e-20) to human gene ECE1 (NP_001388), a gene associated with Hirschsprung disease, cardiac defects, and autonomic dysfunction (3);{Hypertension, essential, susceptibility to}, 145500 (3).
VDRC has 2 RNAi stocks for FBgn0031808 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	493 ± 23	4 of 4	47.30	Up
Head	138 ± 11	4 of 4	13.20	Up
Eye	8 ± 1	0 of 4	0.80	None
Thoracicoabdominal ganglion	274 ± 13	4 of 4	26.30	Up
Salivary gland	9 ± 2	0 of 4	0.90	None
Crop	6 ± 2	0 of 4	0.60	None
Midgut	7 ± 0	0 of 4	0.70	None
Tubule	4 ± 0	0 of 4	0.50	Down
Hindgut	4 ± 1	0 of 4	0.40	Down
Heart	7 ± 3	1 of 4	0.72	None
Fat body	15 ± 3	1 of 4	1.46	None
Ovary	3 ± 1	0 of 4	0.30	Down
Testis	3 ± 0	0 of 4	0.30	Down
Male accessory glands	3 ± 1	0 of 4	0.30	Down
Virgin spermatheca	14 ± 2	1 of 4	1.43	None
Mated spermatheca	11 ± 1	0 of 4	1.12	None
Adult carcass	12 ± 2	0 of 4	1.20	None
Larval CNS	6 ± 1	0 of 4	0.58	Down
Larval Salivary gland	7 ± 2	0 of 4	0.69	None
Larval midgut	6 ± 1	0 of 4	0.59	Down
Larval tubule	4 ± 2	0 of 4	0.40	None
Larval hindgut	5 ± 0	0 of 4	0.50	Down
Larval fat body	38 ± 6	4 of 4	3.60	Up
Larval trachea	1 ± 1	0 of 4	0.11	Down
Larval carcass	6 ± 1	0 of 4	0.61	None
S2 cells (growing)	3 ± 0	0 of 4	0.33	Down
Whole fly	10 ± 1	1 of 4

Looking for FBgn0031808. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720