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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031816 through 18771 annotations produced 1 hits



(CG16947):

Annotation Number : CG16947
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031816
Gbrowse : chr2L:6459078-6463843 (-) // 100.0 //
Probeset : 1630605_at
Accessions : protein= NP_609030;, nucleotide= NM_135186;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0031816.
BioGrid reports that CG16947 interacts with CG2201 CG3508 CG4084 CG7219 CG9653 CG17657 CG4863 CG4954 CG7197 .
VDRC has 1 RNAi stocks for FBgn0031816 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain283 ± 104 of 4 8.90Up
Head125 ± 64 of 4 3.90Up
Eye76 ± 44 of 4 2.38Up
Thoracicoabdominal ganglion399 ± 224 of 412.50Up
Salivary gland322 ± 164 of 410.07Up
Crop10 ± 00 of 4 0.30Down
Midgut14 ± 10 of 4 0.50Down
Tubule26 ± 33 of 4 0.80None
Hindgut141 ± 104 of 4 4.40Up
Heart38 ± 14 of 4 1.21None
Fat body20 ± 34 of 4 0.62Down
Ovary27 ± 34 of 4 0.90None
Testis6 ± 10 of 4 0.20Down
Male accessory glands21 ± 12 of 4 0.70Down
Virgin spermatheca31 ± 23 of 4 0.98None
Mated spermatheca41 ± 72 of 4 1.29None
Adult carcass53 ± 44 of 4 1.70Up
Larval CNS186 ± 244 of 4 5.82Up
Larval Salivary gland776 ± 264 of 424.27Up
Larval midgut20 ± 10 of 4 0.63Down
Larval tubule32 ± 33 of 4 1.00None
Larval hindgut55 ± 74 of 4 1.73Up
Larval fat body143 ± 94 of 4 4.50Up
Larval trachea243 ± 144 of 4 7.62Up
Larval carcass403 ± 134 of 412.60Up
S2 cells (growing)26 ± 24 of 4 0.82None
Whole fly32 ± 34 of 4

Looking for FBgn0031816. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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