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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031821 through 18771 annotations produced 1 hits



(CG9542):

Annotation Number : CG9542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031821
Gbrowse : chr2L:6487561-6488615 (-) // 100.0 //
Probeset : 1638866_at
Accessions : protein= NP_609036;, nucleotide= NM_135192;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0031821.
BDGP gene expression has embryonic in situ data for CG9542: 4 pix of staining in 1 body parts.
VDRC has 6 RNAi stocks for FBgn0031821 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 24 of 4 0.70None
Head261 ± 124 of 4 8.40Up
Eye820 ± 564 of 426.19Up
Thoracicoabdominal ganglion13 ± 11 of 4 0.40Down
Salivary gland2 ± 00 of 4 0.09Down
Crop68 ± 54 of 4 2.20Up
Midgut3 ± 10 of 4 0.10Down
Tubule7 ± 10 of 4 0.20Down
Hindgut7 ± 20 of 4 0.20Down
Heart24 ± 33 of 4 0.79None
Fat body40 ± 90 of 4 1.30None
Ovary2 ± 00 of 4 0.10Down
Testis109 ± 54 of 4 3.50Up
Male accessory glands25 ± 42 of 4 0.80None
Virgin spermatheca21 ± 31 of 4 0.70None
Mated spermatheca24 ± 10 of 4 0.77None
Adult carcass134 ± 114 of 4 4.30Up
Larval CNS17 ± 12 of 4 0.57Down
Larval Salivary gland30 ± 40 of 4 0.98None
Larval midgut7 ± 20 of 4 0.23Down
Larval tubule10 ± 21 of 4 0.30Down
Larval hindgut14 ± 00 of 4 0.45Down
Larval fat body360 ± 364 of 411.50Up
Larval trachea69 ± 174 of 4 2.22Up
Larval carcass335 ± 474 of 410.71Up
S2 cells (growing)13 ± 00 of 4 0.43Down
Whole fly31 ± 34 of 4

Looking for FBgn0031821. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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