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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031826 through 18771 annotations produced 1 hits



(CG9550):

Annotation Number : CG9550
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031826
Gbrowse : chr2L:6497052-6498455 (+) // 100.0 //
Probeset : 1638881_at
Accessions : protein= NP_609042;, nucleotide= NM_135198;
Interpro : 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008459 // chondroitin 6-sulfotransferas
FlyMine data for FBgn0031826.
BDGP gene expression has embryonic in situ data for CG9550: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031826 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.00Down
Head6 ± 10 of 4 0.10Down
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion5 ± 21 of 4 0.00Down
Salivary gland20 ± 30 of 4 0.18Down
Crop4 ± 10 of 4 0.00Down
Midgut7 ± 00 of 4 0.10Down
Tubule6 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.00Down
Heart4 ± 10 of 4 0.04Down
Fat body9 ± 00 of 4 0.08Down
Ovary4 ± 00 of 4 0.00Down
Testis1176 ± 504 of 410.70Up
Male accessory glands11 ± 03 of 4 0.10Down
Virgin spermatheca4 ± 00 of 4 0.04Down
Mated spermatheca10 ± 21 of 4 0.09Down
Adult carcass15 ± 21 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland3 ± 10 of 4 0.03Down
Larval midgut6 ± 00 of 4 0.06Down
Larval tubule3 ± 20 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.03Down
Larval fat body113 ± 604 of 4 1.00None
Larval trachea5 ± 70 of 4 0.05Down
Larval carcass4 ± 21 of 4 0.04Down
S2 cells (growing)2 ± 10 of 4 0.03Down
Whole fly109 ± 114 of 4

Looking for FBgn0031826. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime