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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031831 through 18771 annotations produced 1 hits



Cytochrome c oxidase Polypeptide VB (CG11043):

Annotation Number : CG11043
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031831
Gbrowse : chr2L:6559430-6560141 (+) // 100.0 //
Probeset : 1640123_at
Accessions : protein= NP_609047;, nucleotide= NM_135203;
Pathway : cytochrome c to oxygen // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferre
Interpro : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005740 // mitochondrial envelope // inf
FlyMine data for FBgn0031831.
VDRC has 1 RNAi stocks for FBgn0031831 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye9 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion5 ± 11 of 4 0.00Down
Salivary gland1044 ± 284 of 4 7.15Up
Crop1 ± 00 of 4 0.00Down
Midgut3 ± 00 of 4 0.00Down
Tubule3 ± 10 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart3 ± 00 of 4 0.03Down
Fat body4 ± 10 of 4 0.03Down
Ovary2 ± 00 of 4 0.00Down
Testis1526 ± 284 of 410.50Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.02Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass13 ± 11 of 4 0.10Down
Larval CNS2 ± 00 of 4 0.02Down
Larval Salivary gland4 ± 10 of 4 0.03Down
Larval midgut3 ± 10 of 4 0.02Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.00Down
Larval fat body179 ± 894 of 4 1.20None
Larval trachea6 ± 91 of 4 0.05Down
Larval carcass0 ± 00 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly146 ± 64 of 4

Looking for FBgn0031831. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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