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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031836 through 18771 annotations produced 1 hits



(CG11050):

Annotation Number : CG11050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031836
Gbrowse : chr2L:6611022-6617064 (+) // 100.0 //
Probeset : 1641169_s_at
Accessions : protein= NP_609052; /// NP_723193; /// NP_723194;, nucleotide= NM_135208; /// NM_164694; /// NM_164695;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0031836.
VDRC has 2 RNAi stocks for FBgn0031836 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain607 ± 74 of 4 1.20Up
Head877 ± 924 of 4 1.70Up
Eye1393 ± 344 of 4 2.77Up
Thoracicoabdominal ganglion713 ± 284 of 4 1.40Up
Salivary gland899 ± 324 of 4 1.79Up
Crop593 ± 184 of 4 1.20Up
Midgut814 ± 374 of 4 1.60Up
Tubule1096 ± 404 of 4 2.20Up
Hindgut630 ± 94 of 4 1.30Up
Heart912 ± 314 of 4 1.81Up
Fat body986 ± 944 of 4 1.96Up
Ovary506 ± 74 of 4 1.00None
Testis35 ± 14 of 4 0.10Down
Male accessory glands252 ± 104 of 4 0.50Down
Virgin spermatheca645 ± 474 of 4 1.28None
Mated spermatheca854 ± 584 of 4 1.70Up
Adult carcass1086 ± 474 of 4 2.20Up
Larval CNS280 ± 144 of 4 0.56Down
Larval Salivary gland161 ± 174 of 4 0.32Down
Larval midgut548 ± 734 of 4 1.09None
Larval tubule520 ± 534 of 4 1.00None
Larval hindgut467 ± 264 of 4 0.93None
Larval fat body215 ± 254 of 4 0.40Down
Larval trachea274 ± 314 of 4 0.55Down
Larval carcass477 ± 534 of 4 0.95None
S2 cells (growing)750 ± 14 of 4 1.49Up
Whole fly503 ± 144 of 4

Looking for FBgn0031836. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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