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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031844 through 18771 annotations produced 1 hits



(CG13771):

Annotation Number : CG13771
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031844
Gbrowse : chr2L:6662059-6663614 (-) // 100.0 //
Probeset : 1631076_at
Accessions : protein= NP_609061;, nucleotide= NM_135217;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016291 // acyl-CoA thioesterase activity // inferr
FlyMine data for FBgn0031844.
VDRC has 2 RNAi stocks for FBgn0031844 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.30Down
Head5 10 of 4 0.50None
Eye5 10 of 4 0.54None
Thoracicoabdominal ganglion4 10 of 4 0.40Down
Salivary gland7 20 of 4 0.73None
Crop2 10 of 4 0.30Down
Midgut10 00 of 4 1.00None
Tubule6 10 of 4 0.60Down
Hindgut3 10 of 4 0.40Down
Heart4 10 of 4 0.46None
Fat body9 30 of 4 0.93None
Ovary5 10 of 4 0.50None
Testis111 54 of 410.60Up
Male accessory glands6 20 of 4 0.60None
Virgin spermatheca6 10 of 4 0.60None
Mated spermatheca5 10 of 4 0.50None
Adult carcass8 10 of 4 0.80None
Larval CNS4 20 of 4 0.43Down
Larval Salivary gland6 20 of 4 0.59None
Larval midgut8 00 of 4 0.80None
Larval tubule2 10 of 4 0.30Down
Larval hindgut8 00 of 4 0.80None
Larval fat body17 61 of 4 1.70None
Larval trachea7 40 of 4 0.71None
Larval carcass7 20 of 4 0.71None
S2 cells (growing)23 14 of 4 2.20Up
Whole fly10 10 of 4

Looking for FBgn0031844. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime