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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031850 through 18771 annotations produced 2 hits



Thrombospondin (Tsp):

Annotation Number : CG11326
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031850
Gbrowse : chr2L:6689617-6709085 (-) // 100.0 //
Probeset : 1641490_s_at
Accessions : protein= NP_001137802; /// NP_001137803; /// NP_523495; /// NP_723203; /// NP_723204; /// NP_723205;, nucleotide= NM_001144330; /// NM_001144331; /// NM_078771; /// NM_164702; /// NM_164703; /// NM_164704;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005927 // muscle tendon junction // inferred
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0031850.
BDGP gene expression has embryonic in situ data for Tsp: 81 pix of staining in 17 body parts.
Homophila reports that CG11326 is a close match (6e-11) to human gene DHRD;EFEMP1;FBNL (NP_004096), a gene associated with Doyne honeycomb degeneration of retina, 126600 (3).
BioGrid reports that CG11326 interacts with CG14931 CG17025 CG5053 CG7447 CG11711 CG11901 CG12212 CG1259 CG13117 CG13159 CG13871 CG1451 CG15022 CG15370 CG15781 CG17228 CG17256 CG1830 CG18539 CG2865 CG30147 CG31163 CG32475 CG3751 CG3758 CG4087 CG4863 CG5119 CG5225 CG9075 CG9412 CG9526 CG18000 CG32823 CG17757 .
TRiP has 2 RNAi stocks for FBgn0031850 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031850 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 04 of 4 0.20Down
Head513 ± 294 of 4 5.10Up
Eye1174 ± 594 of 411.61Up
Thoracicoabdominal ganglion11 ± 21 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.07Down
Crop28 ± 44 of 4 0.30Down
Midgut22 ± 12 of 4 0.20Down
Tubule5 ± 10 of 4 0.10Down
Hindgut14 ± 11 of 4 0.10Down
Heart22 ± 04 of 4 0.22Down
Fat body32 ± 114 of 4 0.32Down
Ovary4 ± 20 of 4 0.00Down
Testis10 ± 13 of 4 0.10Down
Male accessory glands15 ± 40 of 4 0.20Down
Virgin spermatheca68 ± 64 of 4 0.68Down
Mated spermatheca136 ± 174 of 4 1.35None
Adult carcass305 ± 294 of 4 3.00Up
Larval CNS10 ± 14 of 4 0.10Down
Larval Salivary gland11 ± 20 of 4 0.11Down
Larval midgut32 ± 14 of 4 0.32Down
Larval tubule12 ± 10 of 4 0.10Down
Larval hindgut49 ± 44 of 4 0.49Down
Larval fat body17 ± 20 of 4 0.20Down
Larval trachea39 ± 274 of 4 0.39Down
Larval carcass267 ± 184 of 4 2.65Up
S2 cells (growing)11 ± 01 of 4 0.12Down
Whole fly101 ± 44 of 4



Thrombospondin (Tsp):

Annotation Number : CG11326
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031850
Gbrowse : chr2L:6686818-6709080 (-) // 100.0 //
Probeset : 1636251_at
Accessions : protein= NP_001137802; /// NP_001137803; /// NP_523495; /// NP_723203; /// NP_723204; /// NP_723205;, nucleotide= NM_001144330; /// NM_001144331; /// NM_078771; /// NM_164702; /// NM_164703; /// NM_164704;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005927 // muscle tendon junction // inferred
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0031850.
BDGP gene expression has embryonic in situ data for Tsp: 81 pix of staining in 17 body parts.
Homophila reports that CG11326 is a close match (6e-11) to human gene DHRD;EFEMP1;FBNL (NP_004096), a gene associated with Doyne honeycomb degeneration of retina, 126600 (3).
BioGrid reports that CG11326 interacts with CG14931 CG17025 CG5053 CG7447 CG11711 CG11901 CG12212 CG1259 CG13117 CG13159 CG13871 CG1451 CG15022 CG15370 CG15781 CG17228 CG17256 CG1830 CG18539 CG2865 CG30147 CG31163 CG32475 CG3751 CG3758 CG4087 CG4863 CG5119 CG5225 CG9075 CG9412 CG9526 CG18000 CG32823 CG17757 .
TRiP has 2 RNAi stocks for FBgn0031850 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031850 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head11 ± 10 of 4 0.80Down
Eye35 ± 24 of 4 2.28Up
Thoracicoabdominal ganglion2 ± 00 of 4 0.20Down
Salivary gland4 ± 20 of 4 0.32Down
Crop3 ± 10 of 4 0.30Down
Midgut17 ± 23 of 4 1.20None
Tubule1 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.11Down
Fat body5 ± 60 of 4 0.33Down
Ovary1 ± 00 of 4 0.10Down
Testis111 ± 24 of 4 7.20Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.31Down
Mated spermatheca5 ± 10 of 4 0.33Down
Adult carcass5 ± 20 of 4 0.40Down
Larval CNS2 ± 10 of 4 0.19Down
Larval Salivary gland6 ± 00 of 4 0.41Down
Larval midgut9 ± 40 of 4 0.60None
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut7 ± 10 of 4 0.50Down
Larval fat body25 ± 101 of 4 1.60None
Larval trachea1 ± 20 of 4 0.12Down
Larval carcass23 ± 53 of 4 1.56None
S2 cells (growing)1 ± 00 of 4 0.12Down
Whole fly15 ± 13 of 4

Looking for FBgn0031850. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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