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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031854 through 18771 annotations produced 1 hits



CG11323 (TTLL3A):

Annotation Number : CG11323
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031854
Gbrowse : chr2L:6736448-6740176 (-) // 100.0 //
Probeset : 1629497_at
Accessions : protein= NP_609069;, nucleotide= NM_135225;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : "0004835 // tubulin-tyrosine ligase activity // inferred from sequence or structural similarity /// 0004835 // tubulin-t
FlyMine data for FBgn0031854.
VDRC has 3 RNAi stocks for FBgn0031854 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 12 of 4 1.60None
Head6 ± 11 of 4 0.90None
Eye7 ± 10 of 4 1.09None
Thoracicoabdominal ganglion6 ± 10 of 4 1.00None
Salivary gland11 ± 40 of 4 1.66None
Crop4 ± 20 of 4 0.60None
Midgut12 ± 10 of 4 1.80Up
Tubule7 ± 00 of 4 1.10None
Hindgut8 ± 21 of 4 1.20None
Heart3 ± 00 of 4 0.56None
Fat body4 ± 30 of 4 0.65None
Ovary3 ± 11 of 4 0.60None
Testis8 ± 13 of 4 1.30None
Male accessory glands5 ± 20 of 4 0.80None
Virgin spermatheca3 ± 10 of 4 0.45None
Mated spermatheca3 ± 10 of 4 0.46None
Adult carcass2 ± 00 of 4 0.40Down
Larval CNS2 ± 10 of 4 0.37Down
Larval Salivary gland2 ± 00 of 4 0.35Down
Larval midgut11 ± 30 of 4 1.64None
Larval tubule5 ± 10 of 4 0.80None
Larval hindgut9 ± 00 of 4 1.35None
Larval fat body11 ± 40 of 4 1.60None
Larval trachea2 ± 10 of 4 0.35Down
Larval carcass8 ± 30 of 4 1.29None
S2 cells (growing)10 ± 00 of 4 1.59Up
Whole fly6 ± 10 of 4

Looking for FBgn0031854. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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