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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031856 through 18771 annotations produced 1 hits


Annotation Number : CG11322
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031856
Gbrowse : chr2L:6757863-6759628 (-) // 100.0 //
Probeset : 1636862_at
Accessions : protein= NP_609071;, nucleotide= NM_135227;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031856.
BioGrid reports that CG11322 interacts with CG3704 CG12470 CG13338 CG15631 CG1883 CG3919 CG6792 CG8206 .
VDRC has 2 RNAi stocks for FBgn0031856 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head2 00 of 4 0.20Down
Eye0 00 of 4 0.05Down
Thoracicoabdominal ganglion2 00 of 4 0.20Down
Salivary gland3 00 of 4 0.25Down
Crop3 00 of 4 0.20Down
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut1 00 of 4 0.10Down
Heart3 10 of 4 0.25Down
Fat body1 10 of 4 0.14Down
Ovary2 00 of 4 0.20Down
Testis219 104 of 416.30Up
Male accessory glands3 10 of 4 0.30Down
Virgin spermatheca1 00 of 4 0.12Down
Mated spermatheca2 00 of 4 0.20Down
Adult carcass3 10 of 4 0.30Down
Larval CNS2 11 of 4 0.15Down
Larval Salivary gland1 00 of 4 0.13Down
Larval midgut3 10 of 4 0.24Down
Larval tubule4 10 of 4 0.30Down
Larval hindgut3 11 of 4 0.22Down
Larval fat body42 202 of 4 3.10None
Larval trachea1 10 of 4 0.14Down
Larval carcass3 00 of 4 0.23Down
S2 cells (growing)1 00 of 4 0.14Down
Whole fly13 14 of 4

Looking for FBgn0031856. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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