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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031858 through 18771 annotations produced 2 hits



(CG17378):

Annotation Number : CG17378
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031858
Gbrowse : chr2L:6775711-6778275 (+) // 100.0 //
Probeset : 1638828_a_at
Accessions : protein= NP_609073; /// NP_723215;, nucleotide= NM_135229; /// NM_164710;
FlyMine data for FBgn0031858.
BDGP gene expression has embryonic in situ data for CG17378: 4 pix of staining in 1 body parts.
VDRC has 5 RNAi stocks for FBgn0031858 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain268 44 of 4 2.80Up
Head222 74 of 4 2.30Up
Eye668 594 of 4 7.04Up
Thoracicoabdominal ganglion295 104 of 4 3.10Up
Salivary gland14 30 of 4 0.15Down
Crop9 01 of 4 0.10Down
Midgut7 00 of 4 0.10Down
Tubule4 00 of 4 0.10Down
Hindgut8 11 of 4 0.10Down
Heart11 14 of 4 0.12Down
Fat body11 12 of 4 0.12Down
Ovary1 00 of 4 0.00Down
Testis1004 244 of 410.60Up
Male accessory glands15 22 of 4 0.20Down
Virgin spermatheca4 10 of 4 0.04Down
Mated spermatheca5 10 of 4 0.06Down
Adult carcass19 14 of 4 0.20Down
Larval CNS41 34 of 4 0.43Down
Larval Salivary gland4 10 of 4 0.04Down
Larval midgut6 10 of 4 0.07Down
Larval tubule3 21 of 4 0.00Down
Larval hindgut6 11 of 4 0.07Down
Larval fat body155 914 of 4 1.60None
Larval trachea15 132 of 4 0.16Down
Larval carcass8 13 of 4 0.09Down
S2 cells (growing)3 10 of 4 0.04Down
Whole fly95 104 of 4



(CG17378):

Annotation Number : CG17378
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031858
Gbrowse : chr2L:6774038-6778456 (+) // 100.0 //
Probeset : 1630577_at
Accessions : protein= NP_609073; /// NP_723215;, nucleotide= NM_135229; /// NM_164710;
FlyMine data for FBgn0031858.
BDGP gene expression has embryonic in situ data for CG17378: 4 pix of staining in 1 body parts.
VDRC has 5 RNAi stocks for FBgn0031858 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 74 of 4 8.60Up
Head53 54 of 4 6.30Up
Eye19 24 of 4 2.36Up
Thoracicoabdominal ganglion28 34 of 4 3.40Up
Salivary gland0 00 of 4 0.08None
Crop3 10 of 4 0.40None
Midgut1 00 of 4 0.20None
Tubule2 00 of 4 0.20Down
Hindgut0 00 of 4 0.10None
Heart0 00 of 4 0.06None
Fat body2 20 of 4 0.27None
Ovary0 00 of 4 0.10None
Testis26 34 of 4 3.10Up
Male accessory glands3 10 of 4 0.40None
Virgin spermatheca1 00 of 4 0.13None
Mated spermatheca1 00 of 4 0.11None
Adult carcass3 10 of 4 0.40None
Larval CNS18 54 of 4 2.14Up
Larval Salivary gland1 00 of 4 0.13None
Larval midgut1 01 of 4 0.20None
Larval tubule1 00 of 4 0.20None
Larval hindgut2 00 of 4 0.24None
Larval fat body5 22 of 4 0.60None
Larval trachea1 10 of 4 0.14None
Larval carcass1 00 of 4 0.17None
S2 cells (growing)0 00 of 4 0.07None
Whole fly8 24 of 4

Looking for FBgn0031858. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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