FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031859 through 18771 annotations produced 2 hits

/// unpaired (CG17377 /// os):

Annotation Number : CG17377
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031859
Gbrowse : chr2L:6801362-6802830 (-) // 100.0 //
Probeset : 1638626_a_at
Accessions : protein= NP_609074; /// NP_723219; /// NP_723220;, nucleotide= NM_135230; /// NM_164713; /// NM_164714;
Pathway : establishment of X:A ratio // non-traceable author statement /// 0016476 // regulation of embryonic cell shape // infer
Interpro : 0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // trace
FlyMine data for FBgn0031859.
BDGP gene expression has embryonic in situ data for CG17377: 8 pix of staining in 1 body parts.
BioGrid reports that CG17377 interacts with CG1921 Dmel CG34168 CG9911 CG17377 CG17666 CG1830 CG3187 CG32156 CG3713 CG4821 CG4998 CG6707 CG7437 CG8942 CG9412 CG9908 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.00	Down
Head	3 ± 2	1 of 4	0.00	Down
Eye	1 ± 0	0 of 4	0.00	Down
Thoracicoabdominal ganglion	3 ± 2	0 of 4	0.00	Down
Salivary gland	6 ± 2	0 of 4	0.01	Down
Crop	4 ± 1	0 of 4	0.00	Down
Midgut	4 ± 1	0 of 4	0.00	Down
Tubule	8 ± 3	1 of 4	0.00	Down
Hindgut	1 ± 0	0 of 4	0.00	Down
Heart	4 ± 1	0 of 4	0.01	Down
Fat body	6 ± 3	0 of 4	0.01	Down
Ovary	2 ± 0	0 of 4	0.00	Down
Testis	3086 ± 99	4 of 4	4.80	Up
Male accessory glands	8 ± 3	0 of 4	0.00	Down
Virgin spermatheca	5 ± 1	0 of 4	0.01	Down
Mated spermatheca	7 ± 3	2 of 4	0.01	Down
Adult carcass	25 ± 7	3 of 4	0.00	Down
Larval CNS	3 ± 0	0 of 4	0.01	Down
Larval Salivary gland	0 ± 0	0 of 4	0.00	Down
Larval midgut	8 ± 1	0 of 4	0.01	Down
Larval tubule	5 ± 1	0 of 4	0.00	Down
Larval hindgut	5 ± 1	0 of 4	0.01	Down
Larval fat body	453 ± 228	4 of 4	0.70	None
Larval trachea	24 ± 36	1 of 4	0.04	Down
Larval carcass	7 ± 1	0 of 4	0.01	Down
S2 cells (growing)	3 ± 0	0 of 4	0.00	Down
Whole fly	647 ± 4	4 of 4

(CG17377):

Annotation Number : CG17377
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031859
Gbrowse : chr2L:6801362-6802654 (-) // 100.0 //
Probeset : 1634203_at
Accessions : protein= NP_609074; /// NP_723219; /// NP_723220;, nucleotide= NM_135230; /// NM_164713; /// NM_164714;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031859.
BDGP gene expression has embryonic in situ data for CG17377: 8 pix of staining in 1 body parts.
BioGrid reports that CG17377 interacts with CG1921 Dmel CG34168 CG9911 CG17377 CG17666 CG1830 CG3187 CG32156 CG3713 CG4821 CG4998 CG6707 CG7437 CG8942 CG9412 CG9908 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 0	3 of 4	0.80	None
Head	5 ± 0	0 of 4	0.70	None
Eye	3 ± 1	1 of 4	0.48	None
Thoracicoabdominal ganglion	5 ± 1	1 of 4	0.70	None
Salivary gland	16 ± 2	0 of 4	2.15	Up
Crop	8 ± 0	3 of 4	1.10	None
Midgut	8 ± 1	0 of 4	1.10	None
Tubule	8 ± 0	1 of 4	1.10	None
Hindgut	5 ± 1	0 of 4	0.70	None
Heart	4 ± 1	2 of 4	0.58	None
Fat body	8 ± 1	3 of 4	1.07	None
Ovary	3 ± 0	2 of 4	0.50	Down
Testis	26 ± 2	4 of 4	3.50	Up
Male accessory glands	7 ± 1	1 of 4	0.90	None
Virgin spermatheca	6 ± 0	2 of 4	0.87	None
Mated spermatheca	5 ± 1	1 of 4	0.69	None
Adult carcass	6 ± 1	0 of 4	0.80	None
Larval CNS	6 ± 1	4 of 4	0.85	None
Larval Salivary gland	8 ± 1	1 of 4	1.07	None
Larval midgut	4 ± 1	0 of 4	0.55	None
Larval tubule	7 ± 2	2 of 4	1.00	None
Larval hindgut	6 ± 1	3 of 4	0.79	None
Larval fat body	14 ± 0	2 of 4	1.90	Up
Larval trachea	6 ± 2	3 of 4	0.85	None
Larval carcass	6 ± 1	2 of 4	0.85	None
S2 cells (growing)	6 ± 0	2 of 4	0.85	None
Whole fly	7 ± 0	4 of 4

Looking for FBgn0031859. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720