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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031860 through 18771 annotations produced 1 hits



(CG11236):

Annotation Number : CG11236
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031860
Gbrowse : chr2L:6803032-6804372 (+) // 100.0 //
Probeset : 1626613_at
Accessions : protein= NP_609075;, nucleotide= NM_135231;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003884 // D-amino-acid oxidase activity // inf
FlyMine data for FBgn0031860.
BDGP gene expression has embryonic in situ data for CG11236: 6 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0031860 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 0.10Down
Head218 ± 144 of 4 3.10Up
Eye66 ± 94 of 4 0.95None
Thoracicoabdominal ganglion6 ± 10 of 4 0.10Down
Salivary gland5 ± 10 of 4 0.07Down
Crop6 ± 20 of 4 0.10Down
Midgut126 ± 54 of 4 1.80Up
Tubule32 ± 32 of 4 0.50Down
Hindgut54 ± 74 of 4 0.80None
Heart303 ± 464 of 4 4.34Up
Fat body666 ± 364 of 4 9.55Up
Ovary2 ± 10 of 4 0.00Down
Testis2 ± 10 of 4 0.00Down
Male accessory glands5 ± 30 of 4 0.10Down
Virgin spermatheca536 ± 294 of 4 7.68Up
Mated spermatheca460 ± 574 of 4 6.59Up
Adult carcass330 ± 114 of 4 4.70Up
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland6 ± 20 of 4 0.09Down
Larval midgut129 ± 74 of 4 1.85Up
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut48 ± 44 of 4 0.70None
Larval fat body51 ± 104 of 4 0.70None
Larval trachea2 ± 10 of 4 0.04Down
Larval carcass3 ± 10 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly69 ± 84 of 4

Looking for FBgn0031860. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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