FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031866 through 18771 annotations produced 2 hits

neuroligin (neuroligin):

Annotation Number : CG13772
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031866
Gbrowse : chr2L:6896829-6906661 (+) // 100.0 //
Probeset : 1628147_at
Accessions : protein= NP_523496;, nucleotide= NM_078772;
Interpro : 0004091 // carboxylesterase activity // non-traceable author statement /// 0016787 // hydrolase activity // inferred fro
FlyMine data for FBgn0031866.
BDGP gene expression has embryonic in situ data for neuroligin: 3 pix of staining in 3 body parts.
Homophila reports that CG13772 is a close match (1e-25) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
TRiP has 1 RNAi stocks for FBgn0031866 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031866 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	683 ± 24	4 of 4	37.40	Up
Head	132 ± 7	4 of 4	7.30	Up
Eye	47 ± 9	4 of 4	2.59	None
Thoracicoabdominal ganglion	493 ± 15	4 of 4	27.00	Up
Salivary gland	14 ± 0	3 of 4	0.80	None
Crop	6 ± 0	2 of 4	0.40	Down
Midgut	6 ± 1	3 of 4	0.30	Down
Tubule	9 ± 2	2 of 4	0.50	Down
Hindgut	11 ± 1	4 of 4	0.60	Down
Heart	1 ± 0	0 of 4	0.08	Down
Fat body	12 ± 3	4 of 4	0.67	None
Ovary	2 ± 0	0 of 4	0.20	Down
Testis	11 ± 2	4 of 4	0.60	None
Male accessory glands	3 ± 1	0 of 4	0.20	Down
Virgin spermatheca	4 ± 0	1 of 4	0.26	Down
Mated spermatheca	5 ± 1	3 of 4	0.32	Down
Adult carcass	7 ± 1	0 of 4	0.40	Down
Larval CNS	290 ± 19	4 of 4	15.91	Up
Larval Salivary gland	8 ± 2	4 of 4	0.48	Down
Larval midgut	12 ± 1	4 of 4	0.67	None
Larval tubule	21 ± 2	4 of 4	1.20	None
Larval hindgut	51 ± 1	4 of 4	2.80	Up
Larval fat body	6 ± 0	1 of 4	0.40	Down
Larval trachea	3 ± 1	0 of 4	0.18	Down
Larval carcass	9 ± 1	4 of 4	0.51	Down
S2 cells (growing)	3 ± 0	2 of 4	0.19	Down
Whole fly	18 ± 2	4 of 4

neuroligin (neuroligin):

Annotation Number : S.C2L000935
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031866
Gbrowse : chr2L:6897203-6897413 (+) // 100.0 //
Probeset : 1630914_s_at
Accessions : protein= NP_523496;, nucleotide= NM_078772;
Interpro : 0004091 // carboxylesterase activity // non-traceable author statement /// 0016787 // hydrolase activity // inferred fro
FlyMine data for FBgn0031866.
BDGP gene expression has embryonic in situ data for neuroligin: 3 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0031866 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031866 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	19 ± 2	4 of 4	7.20	Up
Head	2 ± 1	0 of 4	0.90	None
Eye	0 ± 0	0 of 4	0.34	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	1.60	None
Salivary gland	1 ± 0	0 of 4	0.47	None
Crop	1 ± 0	0 of 4	0.60	None
Midgut	0 ± 0	0 of 4	0.10	None
Tubule	0 ± 0	0 of 4	0.10	Down
Hindgut	0 ± 0	0 of 4	0.20	None
Heart	1 ± 0	0 of 4	0.38	None
Fat body	1 ± 0	0 of 4	0.43	None
Ovary	0 ± 0	0 of 4	0.20	None
Testis	0 ± 0	0 of 4	0.20	None
Male accessory glands	1 ± 0	0 of 4	0.40	None
Virgin spermatheca	0 ± 0	0 of 4	0.20	None
Mated spermatheca	0 ± 0	0 of 4	0.14	None
Adult carcass	1 ± 0	0 of 4	0.30	None
Larval CNS	1 ± 1	0 of 4	0.49	None
Larval Salivary gland	0 ± 0	0 of 4	0.20	None
Larval midgut	0 ± 0	0 of 4	0.24	None
Larval tubule	0 ± 0	0 of 4	0.20	None
Larval hindgut	0 ± 0	0 of 4	0.25	None
Larval fat body	1 ± 0	0 of 4	0.50	None
Larval trachea	0 ± 0	0 of 4	0.35	None
Larval carcass	0 ± 0	0 of 4	0.24	None
S2 cells (growing)	0 ± 0	0 of 4	0.24	None
Whole fly	2 ± 1	0 of 4

Looking for FBgn0031866. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720