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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0031868 through 18771 annotations produced 1 hits

CG10354 (Rat1):

Annotation Number : CG10354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031868
Gbrowse : chr2L:6908086-6911432 (+) // 100.0 //
Probeset : 1632904_at
Accessions : protein= NP_609082;, nucleotide= NM_135238;
Pathway : exonucleolytic // inferred from sequence or structural similarity /// 0006139 // nucleobase
Interpro : nucleoside
FlyMine data for FBgn0031868.
BDGP gene expression has embryonic in situ data for CG10354: 4 pix of staining in 1 body parts.
BioGrid reports that CG10354 interacts with CG2174 CG7987 Dmel CG14425 .
VDRC has 2 RNAi stocks for FBgn0031868 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 14 of 4 1.30None
Head52 34 of 4 0.80None
Eye25 54 of 4 0.40Down
Thoracicoabdominal ganglion83 24 of 4 1.30None
Salivary gland57 44 of 4 0.92None
Crop65 24 of 4 1.10None
Midgut41 24 of 4 0.70None
Tubule47 14 of 4 0.80Down
Hindgut45 24 of 4 0.70None
Heart23 34 of 4 0.37Down
Fat body65 114 of 4 1.05None
Ovary151 54 of 4 2.40Up
Testis7 14 of 4 0.10Down
Male accessory glands73 64 of 4 1.20None
Virgin spermatheca104 104 of 4 1.67Up
Mated spermatheca115 44 of 4 1.85Up
Adult carcass31 14 of 4 0.50Down
Larval CNS148 624 of 4 2.38None
Larval Salivary gland60 44 of 4 0.97None
Larval midgut49 14 of 4 0.79None
Larval tubule46 34 of 4 0.70None
Larval hindgut95 44 of 4 1.53Up
Larval fat body54 54 of 4 0.90None
Larval trachea56 104 of 4 0.91None
Larval carcass112 54 of 4 1.81Up
S2 cells (growing)40 34 of 4 0.64None
Whole fly62 74 of 4

Looking for FBgn0031868. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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