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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031869 through 18771 annotations produced 1 hits



(CG18304):

Annotation Number : CG18304
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031869
Gbrowse : chr2L:6932684-6940918 (-) // 100.0 //
Probeset : 1639778_at
Accessions : protein= NP_609083;, nucleotide= NM_135239;
Pathway : 0005840 // ribosome // inferred from electronic annotation
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // i
FlyMine data for FBgn0031869.
BioGrid reports that CG18304 interacts with CG31361 CG31839 CG30425 .
VDRC has 2 RNAi stocks for FBgn0031869 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.20Down
Head24 34 of 4 1.30None
Eye2 00 of 4 0.12Down
Thoracicoabdominal ganglion6 20 of 4 0.30Down
Salivary gland2 00 of 4 0.13Down
Crop71 64 of 4 3.70Up
Midgut15 20 of 4 0.80None
Tubule4 00 of 4 0.30Down
Hindgut45 24 of 4 2.40Up
Heart34 24 of 4 1.83Up
Fat body5 30 of 4 0.30Down
Ovary4 01 of 4 0.20Down
Testis18 34 of 4 1.00None
Male accessory glands92 164 of 4 4.90Up
Virgin spermatheca6 00 of 4 0.33Down
Mated spermatheca4 10 of 4 0.23Down
Adult carcass60 84 of 4 3.10Up
Larval CNS0 00 of 4 0.05Down
Larval Salivary gland3 10 of 4 0.17Down
Larval midgut15 20 of 4 0.81None
Larval tubule5 10 of 4 0.30Down
Larval hindgut27 14 of 4 1.41None
Larval fat body12 20 of 4 0.60None
Larval trachea3 20 of 4 0.18Down
Larval carcass47 54 of 4 2.51Up
S2 cells (growing)1 00 of 4 0.06Down
Whole fly19 33 of 4

Looking for FBgn0031869. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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