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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031873 through 18771 annotations produced 1 hits



Gas41 (Gas41):

Annotation Number : CG9207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031873
Gbrowse : chr2L:6949309-6950135 (-) // 100.0 //
Probeset : 1633609_at
Accessions : protein= NP_609086;, nucleotide= NM_135242;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II pro
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // inferred
FlyMine data for FBgn0031873.
VDRC has 2 RNAi stocks for FBgn0031873 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain136 54 of 4 1.60Up
Head84 44 of 4 1.00None
Eye123 94 of 4 1.45Up
Thoracicoabdominal ganglion138 84 of 4 1.60Up
Salivary gland48 50 of 4 0.57Down
Crop80 14 of 4 0.90None
Midgut51 14 of 4 0.60Down
Tubule55 43 of 4 0.60Down
Hindgut47 14 of 4 0.60Down
Heart59 14 of 4 0.70Down
Fat body39 33 of 4 0.47Down
Ovary169 54 of 4 2.00Up
Testis45 24 of 4 0.50Down
Male accessory glands55 24 of 4 0.70Down
Virgin spermatheca55 64 of 4 0.65Down
Mated spermatheca71 34 of 4 0.83Down
Adult carcass29 11 of 4 0.40Down
Larval CNS225 254 of 4 2.64Up
Larval Salivary gland70 52 of 4 0.83None
Larval midgut32 13 of 4 0.38Down
Larval tubule51 04 of 4 0.60Down
Larval hindgut50 24 of 4 0.60Down
Larval fat body59 43 of 4 0.70Down
Larval trachea121 74 of 4 1.42Up
Larval carcass45 14 of 4 0.53Down
S2 cells (growing)97 44 of 4 1.14None
Whole fly85 14 of 4

Looking for FBgn0031873. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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