FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0031878 through 18771 annotations produced 1 hits

septin interacting protein 2 (sip2):

Annotation Number : CG9188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031878
Gbrowse : chr2L:6961515-6964073 (-) // 100.0 //
Probeset : 1630870_s_at
Accessions : protein= NP_609090; /// NP_723234; /// NP_723235; /// NP_723236; /// NP_723237;, nucleotide= NM_135246; /// NM_164722; /// NM_164723; /// NM_164724; /// NM_164725;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031878.
BDGP gene expression has embryonic in situ data for CG9188: 11 pix of staining in 6 body parts.
BioGrid reports that CG9188 interacts with CG9528 .
TRiP has 1 RNAi stocks for FBgn0031878 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.00	Down
Head	4 ± 1	0 of 4	0.00	Down
Eye	4 ± 1	0 of 4	0.01	Down
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.00	Down
Salivary gland	8 ± 6	0 of 4	0.03	Down
Crop	8 ± 1	0 of 4	0.00	Down
Midgut	21 ± 1	4 of 4	0.10	Down
Tubule	5 ± 2	0 of 4	0.00	Down
Hindgut	5 ± 2	0 of 4	0.00	Down
Heart	2 ± 0	0 of 4	0.01	Down
Fat body	8 ± 4	1 of 4	0.02	Down
Ovary	403 ± 3	4 of 4	1.10	None
Testis	1932 ± 12	4 of 4	5.50	Up
Male accessory glands	9 ± 3	0 of 4	0.00	Down
Virgin spermatheca	5 ± 1	0 of 4	0.01	Down
Mated spermatheca	3 ± 1	0 of 4	0.01	Down
Adult carcass	11 ± 4	0 of 4	0.00	Down
Larval CNS	364 ± 8	4 of 4	1.04	None
Larval Salivary gland	18 ± 2	4 of 4	0.05	Down
Larval midgut	45 ± 7	4 of 4	0.13	Down
Larval tubule	13 ± 3	1 of 4	0.00	Down
Larval hindgut	41 ± 2	4 of 4	0.12	Down
Larval fat body	345 ± 173	4 of 4	1.00	None
Larval trachea	114 ± 16	4 of 4	0.33	Down
Larval carcass	80 ± 6	4 of 4	0.23	Down
S2 cells (growing)	594 ± 24	4 of 4	1.69	Up
Whole fly	351 ± 20	4 of 4

Looking for FBgn0031878. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720