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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031885 through 18771 annotations produced 2 hits



Menin 1 (Mnn1):

Annotation Number : CG13778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031885
Gbrowse : chr2L:7056305-7059297 (+) // 100.0 //
Probeset : 1624748_a_at
Accessions : protein= NP_001036342; /// NP_523498; /// NP_723252;, nucleotide= NM_001042877; /// NM_078774; /// NM_164739;
Pathway : thorax closure // inferred from mutant phenotype /// 0048728 // proboscis development // inferred from mutant phenotype
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0031885.
BDGP gene expression has embryonic in situ data for Mnn1: 4 pix of staining in 1 body parts.
Homophila reports that CG13778 is a close match (2e-96) to human gene MEN1 (NP_570716), a gene associated with Adrenal adenoma, somatic (3);Angiofibroma, somatic (3);Carcinoid tumor of lung (3);Hyperparathyroidism, AD, 145000 (3);Lipoma, somatic (3);Multiple endocrine neoplasia I (3);Parathyroid adenoma, somatic (3);Prolactinoma, hyperparathyroidism, carcinoid syndrome (3).
TRiP has 2 RNAi stocks for FBgn0031885 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031885 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 44 of 4 2.80Up
Head24 64 of 4 1.00None
Eye8 10 of 4 0.33Down
Thoracicoabdominal ganglion31 64 of 4 1.30None
Salivary gland36 30 of 4 1.47None
Crop21 23 of 4 0.90None
Midgut18 00 of 4 0.70None
Tubule22 23 of 4 0.90None
Hindgut23 24 of 4 0.90None
Heart9 02 of 4 0.38Down
Fat body18 43 of 4 0.74None
Ovary30 34 of 4 1.20None
Testis15 04 of 4 0.60None
Male accessory glands28 24 of 4 1.10None
Virgin spermatheca11 20 of 4 0.48Down
Mated spermatheca10 10 of 4 0.43Down
Adult carcass24 20 of 4 1.00None
Larval CNS10 13 of 4 0.41Down
Larval Salivary gland18 13 of 4 0.73None
Larval midgut10 21 of 4 0.42Down
Larval tubule12 11 of 4 0.50Down
Larval hindgut10 14 of 4 0.41Down
Larval fat body11 30 of 4 0.40Down
Larval trachea6 22 of 4 0.25Down
Larval carcass13 21 of 4 0.54Down
S2 cells (growing)37 04 of 4 1.48Up
Whole fly25 34 of 4



Menin 1 (Mnn1):

Annotation Number : CG13778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031885
Gbrowse : chr2L:7056305-7061721 (+) // 100.0 //
Probeset : 1625478_at
Accessions : protein= NP_001036342; /// NP_523498; /// NP_723252;, nucleotide= NM_001042877; /// NM_078774; /// NM_164739;
Pathway : thorax closure // inferred from mutant phenotype /// 0048728 // proboscis development // inferred from mutant phenotype
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0031885.
BDGP gene expression has embryonic in situ data for Mnn1: 4 pix of staining in 1 body parts.
Homophila reports that CG13778 is a close match (2e-96) to human gene MEN1 (NP_570716), a gene associated with Adrenal adenoma, somatic (3);Angiofibroma, somatic (3);Carcinoid tumor of lung (3);Hyperparathyroidism, AD, 145000 (3);Lipoma, somatic (3);Multiple endocrine neoplasia I (3);Parathyroid adenoma, somatic (3);Prolactinoma, hyperparathyroidism, carcinoid syndrome (3).
TRiP has 2 RNAi stocks for FBgn0031885 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031885 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 14 of 4 5.30Up
Head25 61 of 4 1.40None
Eye4 10 of 4 0.25None
Thoracicoabdominal ganglion25 61 of 4 1.30None
Salivary gland10 40 of 4 0.56None
Crop6 20 of 4 0.30None
Midgut4 00 of 4 0.20None
Tubule3 10 of 4 0.20Down
Hindgut7 20 of 4 0.40None
Heart8 20 of 4 0.45None
Fat body2 00 of 4 0.16None
Ovary34 13 of 4 1.90None
Testis3 10 of 4 0.20None
Male accessory glands3 00 of 4 0.20None
Virgin spermatheca1 00 of 4 0.08None
Mated spermatheca1 00 of 4 0.06None
Adult carcass2 00 of 4 0.10None
Larval CNS3 20 of 4 0.19None
Larval Salivary gland6 20 of 4 0.37None
Larval midgut2 00 of 4 0.14None
Larval tubule2 00 of 4 0.10None
Larval hindgut1 00 of 4 0.06None
Larval fat body1 00 of 4 0.10None
Larval trachea3 30 of 4 0.21None
Larval carcass2 00 of 4 0.13None
S2 cells (growing)8 20 of 4 0.45None
Whole fly18 70 of 4

Looking for FBgn0031885. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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