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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0031887 through 18771 annotations produced 1 hits



(CG11289):

Annotation Number : CG11289
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031887
Gbrowse : chr2L:7068018-7069546 (+) // 100.0 //
Probeset : 1628718_at
Accessions : protein= NP_609097;, nucleotide= NM_135253;
Interpro : "0015020 // glucuronosyltransferase activity // inferred from sequence or structural similarity /// 0015020 // glucurono
FlyMine data for FBgn0031887.
Homophila reports that CG11289 is a close match (3e-37) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 3 RNAi stocks for FBgn0031887 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.50None
Head4 ± 00 of 4 0.70None
Eye3 ± 10 of 4 0.57None
Thoracicoabdominal ganglion2 ± 00 of 4 0.50None
Salivary gland4 ± 00 of 4 0.68None
Crop6 ± 12 of 4 1.00None
Midgut8 ± 01 of 4 1.50None
Tubule2 ± 00 of 4 0.40Down
Hindgut3 ± 10 of 4 0.60None
Heart1 ± 11 of 4 0.33Down
Fat body6 ± 42 of 4 1.11None
Ovary1 ± 00 of 4 0.20Down
Testis3 ± 00 of 4 0.60None
Male accessory glands7 ± 21 of 4 1.40None
Virgin spermatheca4 ± 11 of 4 0.71None
Mated spermatheca3 ± 10 of 4 0.53None
Adult carcass12 ± 41 of 4 2.20None
Larval CNS1 ± 00 of 4 0.22Down
Larval Salivary gland2 ± 10 of 4 0.51None
Larval midgut15 ± 33 of 4 2.70Up
Larval tubule2 ± 00 of 4 0.40Down
Larval hindgut3 ± 00 of 4 0.52None
Larval fat body3 ± 10 of 4 0.70None
Larval trachea3 ± 10 of 4 0.59None
Larval carcass4 ± 00 of 4 0.86None
S2 cells (growing)1 ± 00 of 4 0.23Down
Whole fly5 ± 11 of 4

Looking for FBgn0031887. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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